Factsheet for VIT_07s0151g01130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, vacuole
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid, vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_09s0002g03770.t01
VIT_10s0003g01830.t01
VIT_13s0019g00020.t01
VIT_15s0048g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63200.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT3G63200.1	VIT_13s0019g00020.t01	AT2G39450.1	21798944
AT3G63200.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944
AT3G63200.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT3G63200.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56455	Canola	cytosol	72.21	75.96
PGSC0003DMT400051868	Potato	cytosol	74.55	75.13
CDX76689	Canola	cytosol	75.06	75.06
Bra040428.1-P	Field mustard	cytosol	75.32	74.94
CDX89181	Canola	cytosol	75.32	74.94
Solyc09g065240.2.1	Tomato	cytosol	74.55	74.93
CDX93922	Canola	cytosol	75.06	74.68
PGSC0003DMT400033524	Potato	cytosol	73.51	74.67
Bra007735.1-P	Field mustard	cytosol	74.55	74.55
AT3G63200.1	Thale cress	cytosol	74.29	74.48
KRH32021	Soybean	cytosol	72.99	73.95
KRH71425	Soybean	cytosol	72.73	73.88
KRG95536	Soybean	cytosol	69.61	70.16
KRH67210	Soybean	cytosol	70.13	67.5
VIT_13s0019g04200.t01	Wine grape	cytosol	45.71	38.43
VIT_10s0092g00150.t01	Wine grape	cytosol	41.56	37.47
VIT_00s0567g00050.t01	Wine grape	cytosol	16.88	30.52
VIT_18s0001g10900.t01	Wine grape	cytosol	13.77	26.37
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	27.53	26.11
VIT_18s0001g10850.t01	Wine grape	cytosol	27.53	25.67
VIT_18s0001g11010.t01	Wine grape	cytosol	27.01	25.62
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	25.97	25.58
VIT_00s0567g00060.t01	Wine grape	cytosol	24.68	25.4
VIT_18s0001g10880.t01	Wine grape	cytosol	26.75	25.37
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	26.75	25.37
VIT_18s0001g10870.t01	Wine grape	cytosol	27.01	25.18
VIT_18s0001g10910.t01	Wine grape	cytosol	27.01	25.18
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	26.49	25.12
VIT_18s0001g10920.t01	Wine grape	extracellular	27.01	23.85
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	24.16	23.13
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	27.53	23.04
VIT_18s0001g10930.t01	Wine grape	cytosol	18.7	23.0
VIT_07s0031g00870.t01	Wine grape	cytosol	24.16	22.85
VIT_07s0031g00860.t01	Wine grape	cytosol	23.38	22.06
VIT_07s0005g01860.t01	Wine grape	cytosol	21.04	21.32
VIT_07s0005g01890.t01	Wine grape	mitochondrion	20.52	20.73
VIT_07s0005g01880.t01	Wine grape	plastid	20.26	20.53
VIT_07s0005g01840.t01	Wine grape	cytosol, mitochondrion, plastid	20.52	18.63
VIT_00s0567g00040.t01	Wine grape	cytosol	7.79	18.52

Protein Annotations

EntrezGene:100263127	wikigene:100263127	Gene3D:3.40.1090.10	MapMan:5.7.2.2.4	EMBL:AM454315	InterPro:Acyl_Trfase/lysoPLipase
ProteinID:CAN67759	ProteinID:CAN67759.1	ProteinID:CCB51885	ProteinID:CCB51885.1	UniProt:F6HI39	EMBL:FN595764
GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0016042	GO:GO:0016787	InterPro:IPR002641	EntrezGene:LOC100263127	wikigene:LOC100263127	PFAM:PF01734
InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32241	PANTHER:PTHR32241:SF5	SUPFAM:SSF52151	TIGR:TC54416
UniParc:UPI00015CA348	ArrayExpress:VIT_07s0151g01130	EnsemblPlantsGene:VIT_07s0151g01130	EnsemblPlants:VIT_07s0151g01130.t01	unigene:Vvi.15949	RefSeq:XP_002277881
RefSeq:XP_002277881.1	SEG:seg	:	:	:	:

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:F6HI39]

Coordinates

chr7:+:1320263..1322417

Molecular Weight (calculated)

41976.5 Da

IEP (calculated)

8.763

GRAVY (calculated)

-0.134

Length

385 amino acids

Sequence
(BLAST)

001: MELSKVTLEI FSKLEQKWLS HCEGSKKTRV LSIDGGGTTA VVATAALVHL EDQIQLKTGD SHSRIVDFFD VVVGTGIGAV FAAMLTADDG SGRPLFSAKE
101: AVRFLTEKQC EMFKIKHVGV FRRSRRFSGR SMDKVLKEAL RREDGKVLTL KDTCKPLLVP CFDLNSAAPF VFSRADASES PSFDFELWKV CRATTATPSM
201: FKPFSLTSVD GKTSCSAVDG GLVMNNPTAA AVTHVLHNKR DFPSVNGVED LLVLSLGNGS LTDPSRWRLR RDGECSTSAV VDIVLDGVSE TVDQMLGNAF
301: CWNRTDYVRI QANGFGIQKV GPRMAEEVLK ERGVESLPFG GKRLLTETNG QRIERFVQRL VASGKSSLPP SPVKEAAVSP LVNGR

Best Arabidopsis Sequence Match ( AT3G63200.1 )
(BLAST)

001: MEMDLSKVTL DIFTKLEQKW LSHCDSSRKT RILSIDGGGT TGIVAAASIL HLEHQIRLQT GDPHAHISDF FDIVAGTGIG GILAALLVAD DGSGRPMFTA
101: RDAVKFVAEK NSELFEIRYT GVFRRNKRYS GKSMERVLET AFRREDGKVL TMKDTCKPLL VPCYDLKTSA PFVFSRAGAS ESPSFDFELW KVCRATSATP
201: SLFKPFSVVS VDGKTSCSAV DGGLVMNNPT AAAVTHVLHN KRDFPSVNGV DDLLVLSLGN GPSTMSSSPG RKLRRNGDYS TSSVVDIVVD GVSDTVDQML
301: GNAFCWNRTD YVRIQANGLT SGGAEELLKE RGVETAPFGV KRILTESNGE RIEGFVQRLV ASGKSSLPPS PCKESAVNPL ADGR

Arabidopsis Description

PLP9Probable inactive patatin-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZQ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.