Factsheet for VIT_00s0567g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0567g00050.t01	Wine grape	cytosol	41.71	73.24
VIT_00s0567g00040.t01	Wine grape	cytosol	30.75	70.99
PGSC0003DMT400002016	Potato	cytosol	44.12	63.95
PGSC0003DMT400058995	Potato	cytosol	26.47	61.88
Solyc02g090490.2.1	Tomato	extracellular	67.11	60.92
PGSC0003DMT400025955	Potato	extracellular	66.58	60.44
Solyc02g065100.1.1	Tomato	endoplasmic reticulum, extracellular	65.24	59.37
Solyc03g044710.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	64.97	59.27
TraesCS1A01G407900.1	Wheat	cytosol	37.17	58.4
PGSC0003DMT400002019	Potato	golgi, vacuole	63.9	56.9
VIT_18s0001g11010.t01	Wine grape	cytosol	61.76	56.9
TraesCS7D01G491900.1	Wheat	plastid	64.17	56.87
Solyc02g065090.2.1	Tomato	nucleus	63.64	56.67
VIT_18s0001g10850.t01	Wine grape	cytosol	62.57	56.66
VIT_18s0001g10870.t01	Wine grape	cytosol	62.57	56.66
VIT_18s0001g10910.t01	Wine grape	cytosol	62.57	56.66
TraesCS3B01G036100.1	Wheat	cytosol	41.18	56.62
TraesCS4A01G450400.1	Wheat	mitochondrion	63.9	56.37
VIT_18s0001g10930.t01	Wine grape	cytosol	47.06	56.23
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	60.96	56.16
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	58.56	56.01
HORVU2Hr1G037280.1	Barley	cytosol	38.5	55.81
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	60.43	55.66
TraesCS7B01G411800.1	Wheat	plastid	63.64	55.61
TraesCS3D01G033500.1	Wheat	plastid	64.17	55.43
TraesCS3D01G033200.1	Wheat	plastid	64.17	55.43
TraesCS7A01G038300.1	Wheat	mitochondrion	62.83	55.42
TraesCS4A01G449600.1	Wheat	mitochondrion	62.83	55.42
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	60.16	55.42
KXG25325	Sorghum	plastid	64.71	55.38
TraesCS6A01G142200.1	Wheat	cytosol	48.66	55.32
TraesCS7D01G034300.1	Wheat	mitochondrion	60.96	55.21
TraesCS7A01G504400.1	Wheat	cytoskeleton, cytosol, peroxisome	59.63	55.2
VIT_18s0001g10880.t01	Wine grape	cytosol	59.89	55.17
TraesCS3B01G036800.1	Wheat	plastid	63.9	55.07
Os08t0477100-01	Rice	plastid	63.37	54.99
TraesCS7B01G411200.1	Wheat	plastid	62.03	54.98
TraesCS7A01G504700.1	Wheat	plastid	62.03	54.98
HORVU7Hr1G113030.2	Barley	plastid	38.24	54.79
TraesCS7D01G491200.1	Wheat	mitochondrion, plastid	61.76	54.74
TraesCS7A01G504100.1	Wheat	plastid	61.76	54.74
TraesCS4D01G285300.1	Wheat	plastid	63.37	54.73
VIT_18s0001g10900.t01	Wine grape	cytosol	29.41	54.73
Os08t0477500-01	Rice	plasma membrane	39.3	54.65
TraesCS6B01G170200.1	Wheat	plastid	62.03	54.59
TraesCS4A01G017400.1	Wheat	plastid	63.1	54.5
TraesCS3A01G046500.1	Wheat	plastid	63.1	54.5
TraesCS7D01G491300.1	Wheat	plastid	37.43	54.47
Zm00001d031811_P001	Maize	plastid	63.37	54.36
TraesCS4B01G286600.1	Wheat	plastid	62.83	54.27
HORVU4Hr1G075070.7	Barley	plastid	62.83	54.02
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	58.02	53.98
TraesCS7B01G411300.1	Wheat	mitochondrion	60.43	53.94
VIT_07s0031g00860.t01	Wine grape	cytosol	58.82	53.92
Zm00001d031813_P001	Maize	extracellular	62.03	53.33
OQU80645	Sorghum	cytosol	56.95	53.12
EES15134	Sorghum	plastid	61.76	53.1
Os08t0376500-00	Rice	plastid	36.9	53.08
Os08t0476900-01	Rice	plastid	60.96	53.02
VIT_07s0031g00870.t01	Wine grape	cytosol	57.49	52.83
TraesCS7A01G504200.1	Wheat	mitochondrion	58.02	52.54
HORVU5Hr1G119820.1	Barley	plastid	55.62	52.39
TraesCS2B01G185200.1	Wheat	cytosol	56.95	52.33
TraesCS5B01G529000.1	Wheat	cytosol	55.35	52.14
HORVU5Hr1G119810.5	Barley	cytosol	53.48	51.81
TraesCS3D01G033600.1	Wheat	mitochondrion, peroxisome	41.71	51.66
TraesCS5D01G528000.1	Wheat	cytosol, peroxisome, plastid	55.08	51.5
TraesCS2D01G166800.1	Wheat	cytosol	55.88	51.48
HORVU7Hr1G113080.1	Barley	cytosol	63.9	51.18
TraesCS2A01G159600.1	Wheat	cytosol	55.35	50.99
HORVU2Hr1G029000.2	Barley	cytosol	55.88	50.73
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	62.3	50.65
TraesCS4A01G345400.1	Wheat	cytosol	28.88	50.47
TraesCS5D01G528100.1	Wheat	cytosol	52.67	50.26
TraesCS5B01G529100.1	Wheat	cytosol	52.67	50.26
TraesCS1A01G407800.2	Wheat	cytosol	52.41	50.0
VIT_18s0001g10920.t01	Wine grape	extracellular	58.02	49.77
HORVU3Hr1G004220.4	Barley	cytosol, plastid	63.37	49.38
TraesCS4A01G345300.1	Wheat	cytosol	52.67	49.01
HORVU7Hr1G006840.3	Barley	cytosol	37.7	48.62
Zm00001d031815_P001	Maize	cytosol	56.95	48.52
Os08t0376550-00	Rice	cytosol	22.99	47.51
HORVU6Hr1G027900.2	Barley	cytosol	42.78	46.65
Zm00001d031814_P001	Maize	cytosol, plasma membrane, plastid	51.34	45.61
TraesCS3B01G036500.1	Wheat	plastid	50.27	42.34
OQU80643	Sorghum	cytosol	55.08	41.87
VIT_07s0005g01890.t01	Wine grape	mitochondrion	39.57	38.85
VIT_07s0005g01860.t01	Wine grape	cytosol	39.3	38.68
VIT_07s0005g01880.t01	Wine grape	plastid	38.77	38.16
VIT_07s0005g01840.t01	Wine grape	cytosol, mitochondrion, plastid	40.64	35.85
OQU83677	Sorghum	cytosol	25.13	28.23
VIT_13s0019g04200.t01	Wine grape	cytosol	31.82	25.98
VIT_07s0151g01130.t01	Wine grape	cytosol	25.4	24.68
VIT_10s0092g00150.t01	Wine grape	cytosol	27.54	24.12

Protein Annotations

EntrezGene:100244172	wikigene:100244172	Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	EMBL:AM480971	InterPro:Acyl_Trfase/lysoPLipase
ProteinID:CAN62059	ProteinID:CAN62059.1	ProteinID:CCB50158	ProteinID:CCB50158.1	UniProt:F6HD63	EMBL:FN595550
GO:GO:0003674	GO:GO:0003824	GO:GO:0004620	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016020
GO:GO:0016042	GO:GO:0016787	GO:GO:0047372	InterPro:IPR002641	EntrezGene:LOC100244172	wikigene:LOC100244172
PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32176	PANTHER:PTHR32176:SF6	SUPFAM:SSF52151
TIGR:TC52706	UniParc:UPI000210A6F9	ArrayExpress:VIT_00s0567g00060	EnsemblPlantsGene:VIT_00s0567g00060	EnsemblPlants:VIT_00s0567g00060.t01	RefSeq:XP_002262942
RefSeq:XP_002262942.1	:	:	:	:	:

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:F6HD63]

Coordinates

chrUn:-:32009432..32011771

Molecular Weight (calculated)

41108.0 Da

IEP (calculated)

5.140

GRAVY (calculated)

-0.205

Length

374 amino acids

Sequence
(BLAST)

001: MVTVLSIDGG GVRGIIPGTL LAFLESKFQE LDGDDARIAD YFDVIAGTST GGLVTAMLTA PNKDNRPVFA AKDINSFYLD HCPEIFPQNS LIDAVRGPKY
101: NGKYLQSLAV DLLDKVYLKQ TLTNVVIPTF DIKLLQPVIF STDEAKVNVA KNARLSDICI STSAAPTYLP AHYFETKEAN GKTRSFNLID GGVAANNPTL
201: VAMSHISKEI LMDNTQFIEM KPMDSKSMLV LSLGTGAPKH EEKYSAAEAS RWGLHRWAYN NGATPLLDIF SHASSDMVDI HVSTVFQSLG CEKNYLRIQD
301: DTLTGEESSV DVATTENLQR LGEIGKELLA KPLSRVNLET GRHEQLEGEG TNQEALTQFA KLLSEERKFR QVTR

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.