Factsheet for VIT_18s0001g10900.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g10830.t01
VIT_18s0001g10850.t01
VIT_18s0001g10870.t01
VIT_18s0001g10900.t01
VIT_18s0001g10910.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26560.1	VIT_18s0001g10830.t01	AT2G26560.1	21798944
AT2G26560.1	VIT_18s0001g10850.t01	AT2G26560.1	21798944
AT2G26560.1	VIT_18s0001g10870.t01	AT2G26560.1	21798944
AT2G26560.1	VIT_18s0001g10900.t01	AT2G26560.1	21798944
AT2G26560.1	VIT_18s0001g10910.t01	AT2G26560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g10910.t01	Wine grape	cytosol	100.0	48.67
VIT_18s0001g10870.t01	Wine grape	cytosol	99.5	48.43
VIT_18s0001g10850.t01	Wine grape	cytosol	97.51	47.46
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	95.02	41.52
VIT_18s0001g10930.t01	Wine grape	cytosol	61.69	39.62
HORVU4Hr1G019140.24	Barley	cytosol	34.83	32.26
AT2G26560.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	64.68	31.94
VIT_00s0567g00050.t01	Wine grape	cytosol	33.33	31.46
CDY21469	Canola	cytosol, peroxisome, vacuole	63.18	31.2
HORVU5Hr1G069130.5	Barley	cytosol	62.69	31.11
Bra000578.1-P	Field mustard	cytosol	62.69	31.11
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	62.69	31.03
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	62.69	31.03
CDX83197	Canola	cytosol	62.69	30.96
VIT_18s0001g10880.t01	Wine grape	cytosol	62.19	30.79
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	62.19	30.79
VIT_18s0001g11010.t01	Wine grape	cytosol	62.19	30.79
TraesCS5D01G249800.1	Wheat	cytosol	61.69	30.62
TraesCS5A01G243200.1	Wheat	cytosol	61.19	30.37
VIT_07s0031g00860.t01	Wine grape	cytosol	61.19	30.15
TraesCS5B01G241100.2	Wheat	cytosol	60.7	29.9
Zm00001d005911_P001	Maize	cytosol	59.7	29.85
VIT_00s0567g00060.t01	Wine grape	cytosol	54.73	29.41
KRH15334	Soybean	cytosol	59.7	29.41
KRH15338	Soybean	cytosol	59.7	29.41
KRH05708	Soybean	cytosol	54.73	29.18
KXG35787	Sorghum	cytosol	56.22	28.75
KRH05709	Soybean	cytosol	58.21	28.68
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	55.72	28.64
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	55.72	27.86
VIT_07s0031g00870.t01	Wine grape	cytosol	56.22	27.76
VIT_18s0001g10920.t01	Wine grape	extracellular	58.71	27.06
VIT_00s0567g00040.t01	Wine grape	cytosol	21.39	26.54
GSMUA_Achr7P12940_001	Banana	cytosol	62.69	26.47
GSMUA_Achr9P27010_001	Banana	cytosol	55.72	26.11
Os09t0462400-00	Rice	cytosol	39.3	23.1
VIT_07s0005g01880.t01	Wine grape	plastid	42.29	22.37
VIT_07s0005g01890.t01	Wine grape	mitochondrion	41.79	22.05
GSMUA_Achr11P...	Banana	cytosol	36.82	21.89
VIT_07s0005g01860.t01	Wine grape	cytosol	40.8	21.58
VIT_07s0005g01840.t01	Wine grape	cytosol, mitochondrion, plastid	41.29	19.58
HORVU2Hr1G060260.1	Barley	plastid	25.87	18.91
HORVU4Hr1G050060.10	Barley	plastid	21.39	16.67
VIT_07s0151g01130.t01	Wine grape	cytosol	26.37	13.77
VIT_13s0019g04200.t01	Wine grape	cytosol	29.85	13.1
VIT_10s0092g00150.t01	Wine grape	cytosol	27.36	12.88
HORVU3Hr1G101170.1	Barley	mitochondrion, plastid	5.47	5.47

Protein Annotations

Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	InterPro:Acyl_Trfase/lysoPLipase	ProteinID:CCB45861	ProteinID:CCB45861.1	UniProt:F6H011
EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004620	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0047372	InterPro:IPR002641	PFAM:PF01734
InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32176	PANTHER:PTHR32176:SF24	SUPFAM:SSF52151	UniParc:UPI0002108108
ArrayExpress:VIT_18s0001g10900	EnsemblPlantsGene:VIT_18s0001g10900	EnsemblPlants:VIT_18s0001g10900.t01	:	:	:

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:F6H011]

Coordinates

chr18:-:9187360..9188756

Molecular Weight (calculated)

21772.7 Da

IEP (calculated)

5.080

GRAVY (calculated)

-0.364

Length

201 amino acids

Sequence
(BLAST)

001: MGEGPKSPLQ PPTYGNLITI LSIDGGGIRG LIPGTVLGFL ESELQKLDGE DARISDYFDV IAGTSTGGLV TAMLTTPNEN TGRPLFSAKD IKDFYLDHCP
101: KIFPQHSHDP IPHDDTLSGI TSSVDIATKE NLDDLVKIGE ELLKKRVSRV NLDTGIFEPS NHETNEEALT SFARLLSQEK QRRDTRSPHG HAAASKGLVV
201: V

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.