CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05708
KRH05709
KRH15334
KRH15338
KRH24407
KRH29386

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26560.1	KRH24407	AT1G34570.1	21798944
AT2G26560.1	KRH29386	AT1G34570.1	21798944
AT2G26560.1	KRH05708	AT2G26560.1	21798944
AT2G26560.1	KRH05709	AT2G26560.1	21798944
AT2G26560.1	KRH15334	AT2G26560.1	21798944
AT2G26560.1	KRH15338	AT2G26560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15338	Soybean	cytosol	87.99	87.99
KRH15334	Soybean	cytosol	87.75	87.75
KRH05708	Soybean	cytosol	73.77	79.84
KRH61261	Soybean	cytosol, peroxisome, plastid	35.05	63.56
KRH15336	Soybean	cytosol	61.03	61.03
VIT_18s0001g10870.t01	Wine grape	cytosol	61.76	61.02
TraesCS5D01G249800.1	Wheat	cytosol	60.54	60.99
VIT_18s0001g10910.t01	Wine grape	cytosol	61.52	60.77
VIT_18s0001g10850.t01	Wine grape	cytosol	61.52	60.77
HORVU5Hr1G069130.5	Barley	cytosol	60.29	60.74
TraesCS5B01G241100.2	Wheat	cytosol	60.54	60.54
Os09t0462400-00	Rice	cytosol	50.74	60.53
TraesCS5A01G243200.1	Wheat	cytosol	60.05	60.49
Zm00001d005911_P001	Maize	cytosol	59.56	60.45
KRH05706	Soybean	cytosol, extracellular, nucleus	55.64	60.37
Bra000578.1-P	Field mustard	cytosol	59.8	60.25
CDX83197	Canola	cytosol	60.05	60.2
KXG35787	Sorghum	cytosol	57.84	60.05
CDY21469	Canola	cytosol, peroxisome, vacuole	59.56	59.71
KRH05707	Soybean	cytosol	59.8	59.66
KRH51959	Soybean	nucleus	59.56	58.7
GSMUA_Achr11P...	Banana	cytosol	48.53	58.58
AT2G26560.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	58.33	58.48
VIT_18s0001g10900.t01	Wine grape	cytosol	28.68	58.21
KRH28482	Soybean	cytosol	57.11	57.82
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	61.76	54.78
HORVU4Hr1G050060.10	Barley	plastid	33.82	53.49
KRH15337	Soybean	cytosol	21.08	52.12
GSMUA_Achr9P27010_001	Banana	cytosol	54.66	51.98
HORVU4Hr1G019140.24	Barley	cytosol	27.21	51.15
HORVU2Hr1G060260.1	Barley	plastid	34.31	50.91
GSMUA_Achr7P12940_001	Banana	cytosol	58.82	50.42
HORVU3Hr1G101170.1	Barley	mitochondrion, plastid	24.51	49.75
KRH48830	Soybean	extracellular, vacuole	43.14	42.11
KRH48827	Soybean	cytosol, plastid	23.53	40.34
KRH48829	Soybean	endoplasmic reticulum, extracellular	38.24	38.33
KRH34879	Soybean	cytosol	27.94	24.62
KRH71425	Soybean	cytosol	21.57	23.22
KRH32021	Soybean	cytosol	21.57	23.16
KRH36757	Soybean	cytosol	24.51	23.04
KRG95536	Soybean	cytosol	21.57	23.04
KRH11757	Soybean	cytosol	23.77	22.45
KRH67210	Soybean	cytosol	21.32	21.75
KRG91895	Soybean	cytosol, extracellular, mitochondrion, plastid	27.45	20.59

Protein Annotations

EntrezGene:100799835	Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	EMBL:ACUP02010773	InterPro:Acyl_Trfase/lysoPLipase	EnsemblPlantsGene:GLYMA_17G244200
GO:GO:0003674	GO:GO:0003824	GO:GO:0004620	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016020
GO:GO:0016042	GO:GO:0016787	GO:GO:0047372	InterPro:IPR002641	UniProt:K7MNQ9	EnsemblPlants:KRH05709
ProteinID:KRH05709	ProteinID:KRH05709.1	PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32176
PANTHER:PTHR32176:SF6	SUPFAM:SSF52151	UniParc:UPI00023DA964	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:-:39960277..39964490

Molecular Weight (calculated)

44830.4 Da

IEP (calculated)

7.075

GRAVY (calculated)

-0.278

Length

408 amino acids

Sequence
(BLAST)

001: MEATKGFVSP TSCKCDDGHL VTVLSIDGGG IRGIIPGIIL GFLESELQKL DGDHVRLADY FDVIAGTSTG GLVTAMLTAP DENNRPLYAA KDIKDFYLDH
101: TPKIFPQNNN LFSPILKLGR TLFGPQYNGK YLHKLIREKL GDTKLHQTLT NVVIPAFDIK HLQPAIFSSF QLKKRPDLNA SLSDICISTS AAPTYLPAHS
201: FETKTHHGVS KFDLIDGGVA ANNPALVAMA EVTNRISHEG QCNSLNVKPM QYDRFLVISL GTGSQQKEMK YSADEAAQWG IFSWVTTTNG GTPLIDAFSH
301: ASSDMVDFHI TSLFQALNSE HNYLRIQDDS LNGDMSSVDL ATEKNLNDLV KVGESLLKKP VSKINLQTGV HEPVNSHETN GEALKRFAER LSKQRRFRKS
401: QMSANGNL

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.