CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
vacuole 2
mitochondrion 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61261	Soybean	cytosol, peroxisome, plastid	50.72	93.33
KRH05707	Soybean	cytosol	82.13	83.13
KRH05706	Soybean	cytosol, extracellular, nucleus	75.12	82.71
KRH15336	Soybean	cytosol	81.4	82.6
KRH15337	Soybean	cytosol	32.37	81.21
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	71.26	72.66
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	71.01	72.41
VIT_18s0001g11010.t01	Wine grape	cytosol	70.77	72.17
VIT_18s0001g10880.t01	Wine grape	cytosol	70.29	71.67
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	70.05	71.43
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	66.67	70.59
Solyc04g079250.2.1	Tomato	cytosol	68.6	70.12
Solyc04g079240.2.1	Tomato	nucleus	69.57	69.9
Solyc04g079260.2.1	Tomato	cytosol	67.15	68.47
VIT_18s0001g10920.t01	Wine grape	extracellular	68.12	64.68
KRH15338	Soybean	cytosol	59.9	60.78
KRH15334	Soybean	cytosol	59.66	60.54
KRH28482	Soybean	cytosol	58.7	60.3
KRH05709	Soybean	cytosol	58.7	59.56
KRH05708	Soybean	cytosol	53.86	59.15
GSMUA_Achr3P06850_001	Banana	cytosol	58.21	59.07
KRH48830	Soybean	extracellular, vacuole	44.69	44.26
KRH48827	Soybean	cytosol, plastid	24.4	42.44
KRH48829	Soybean	endoplasmic reticulum, extracellular	38.41	39.07
KRH34879	Soybean	cytosol	29.23	26.13
KRH32021	Soybean	cytosol	22.22	24.21
KRH36757	Soybean	cytosol	25.36	24.19
KRG95536	Soybean	cytosol	22.22	24.08
KRH11757	Soybean	cytosol	25.12	24.07
KRH71425	Soybean	cytosol	21.5	23.48
KRH67210	Soybean	cytosol	21.98	22.75
KRG91895	Soybean	cytosol, extracellular, mitochondrion, plastid	28.74	21.88

Protein Annotations

EntrezGene:100783909	Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	EMBL:ACUP02003402	InterPro:Acyl_Trfase/lysoPLipase	EnsemblPlantsGene:GLYMA_06G037900
GO:GO:0003674	GO:GO:0003824	GO:GO:0004620	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016020
GO:GO:0016042	GO:GO:0016787	GO:GO:0047372	UniProt:I1K7Y0	InterPro:IPR002641	EnsemblPlants:KRH51959
ProteinID:KRH51959	ProteinID:KRH51959.1	PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32176
PANTHER:PTHR32176:SF24	SUPFAM:SSF52151	UniParc:UPI0002339BCA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:2902002..2905685

Molecular Weight (calculated)

45815.7 Da

IEP (calculated)

6.322

GRAVY (calculated)

-0.264

Length

414 amino acids

Sequence
(BLAST)

001: MERTLSSLLQ IQPPTYGNLV TILSIDGGGI RGIIPATILA FLEAQLQELD GEDARLADYF DVIAGTSTGG IVTAMLSAPN DNQRPLFAAK DIKPFYLEHC
101: PKIFPQHSGL WGSVGKLLGS LGGPKYDGKY LKEVVREKLG QTRLHETLTN IVIPTFDIKT LQPIIFSSYQ IKRSPCLDAR LSDICISTSA APTYLPAYHF
201: KNQDSQGNTH EFNLIDGGVC ANNPTLVAMN QVTKQIINEN PDFFSIKPME YGRFLIISLG TGTPKNEQKF NAQMAAKWGL LDWLTNSGST PLIDVFTQSS
301: ADMVDFHLAT VTQALHSENN YLRIQDDTLT GTDSSVDIAT KENLEKLSQI GERLLKKPVS QINLEDGLFE SVGNGETNEN ALKRFAKILS QERRLRESKS
401: PHTKKVPSYF AREF

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.