CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plasma membrane 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05708
KRH05709
KRH15334
KRH15338
KRH24407
KRH29386

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26560.1	KRH24407	AT1G34570.1	21798944
AT2G26560.1	KRH29386	AT1G34570.1	21798944
AT2G26560.1	KRH05708	AT2G26560.1	21798944
AT2G26560.1	KRH05709	AT2G26560.1	21798944
AT2G26560.1	KRH15334	AT2G26560.1	21798944
AT2G26560.1	KRH15338	AT2G26560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15338	Soybean	cytosol	86.21	79.66
KRH15334	Soybean	cytosol	85.94	79.41
KRH05709	Soybean	cytosol	79.84	73.77
KRH61261	Soybean	cytosol, peroxisome, plastid	34.75	58.22
Os09t0462400-00	Rice	cytosol	52.52	57.89
KXG35787	Sorghum	cytosol	59.15	56.74
TraesCS5D01G249800.1	Wheat	cytosol	60.48	56.3
TraesCS5A01G243200.1	Wheat	cytosol	60.48	56.3
Zm00001d005911_P001	Maize	cytosol	59.95	56.22
TraesCS5B01G241100.2	Wheat	cytosol	60.74	56.13
HORVU5Hr1G069130.5	Barley	cytosol	60.21	56.05
KRH15336	Soybean	cytosol	59.68	55.15
VIT_18s0001g10850.t01	Wine grape	cytosol	60.21	54.96
VIT_18s0001g10900.t01	Wine grape	cytosol	29.18	54.73
Bra000578.1-P	Field mustard	cytosol	58.62	54.57
VIT_18s0001g10910.t01	Wine grape	cytosol	59.68	54.48
VIT_18s0001g10870.t01	Wine grape	cytosol	59.68	54.48
GSMUA_Achr11P...	Banana	cytosol	48.81	54.44
CDY21469	Canola	cytosol, peroxisome, vacuole	58.62	54.3
KRH05706	Soybean	cytosol, extracellular, nucleus	54.11	54.26
AT2G26560.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	58.36	54.05
CDX83197	Canola	cytosol	58.36	54.05
KRH51959	Soybean	nucleus	59.15	53.86
KRH05707	Soybean	cytosol	58.36	53.79
KRH28482	Soybean	cytosol	56.23	52.61
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	60.21	49.35
GSMUA_Achr9P27010_001	Banana	cytosol	55.97	49.18
HORVU4Hr1G050060.10	Barley	plastid	33.42	48.84
HORVU4Hr1G019140.24	Barley	cytosol	27.85	48.39
KRH15337	Soybean	cytosol	20.69	47.27
GSMUA_Achr7P12940_001	Banana	cytosol	58.89	46.64
HORVU3Hr1G101170.1	Barley	mitochondrion, plastid	24.14	45.27
HORVU2Hr1G060260.1	Barley	plastid	32.63	44.73
KRH48830	Soybean	extracellular, vacuole	41.64	37.56
KRH48829	Soybean	endoplasmic reticulum, extracellular	37.67	34.89
KRH48827	Soybean	cytosol, plastid	22.02	34.87
KRH34879	Soybean	cytosol	25.73	20.95
KRG95536	Soybean	cytosol	21.22	20.94
KRH71425	Soybean	cytosol	20.16	20.05
KRH36757	Soybean	cytosol	23.08	20.05
KRH32021	Soybean	cytosol	19.89	19.74
KRH11757	Soybean	cytosol	22.55	19.68
KRH67210	Soybean	cytosol	20.69	19.5
KRG91895	Soybean	cytosol, extracellular, mitochondrion, plastid	25.2	17.46

Protein Annotations

Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	EMBL:ACUP02010773	InterPro:Acyl_Trfase/lysoPLipase	EnsemblPlantsGene:GLYMA_17G244100	GO:GO:0003674
GO:GO:0003824	GO:GO:0004620	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016020	GO:GO:0016042
GO:GO:0016787	GO:GO:0047372	UniProt:I1MXQ8	InterPro:IPR002641	EnsemblPlants:KRH05708	ProteinID:KRH05708
ProteinID:KRH05708.1	PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32176	PANTHER:PTHR32176:SF6
SUPFAM:SSF52151	UniParc:UPI0002959800	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:39954175..39956727

Molecular Weight (calculated)

41843.6 Da

IEP (calculated)

8.020

GRAVY (calculated)

-0.157

Length

377 amino acids

Sequence
(BLAST)

001: MEATKALVSS TPCDDGHLVT VLSIDGGGIR GIIPGIILGF LESELQKLDG NHVRLADYFD VIAGTSTGGL VTAILTAPNE NNRPLYAAKD IKNFYLDHTP
101: KIFPQNKCWN LLSSMVKLTR TLFGPQYNGK YLHNLIREKL GETKLHQTLT NVVIPGFDIK RLQPTIFSSF QLDPTYLPAH SFETKTHHGH VIGKFDLIDG
201: GIAANNPALV VMAEVTNQIF HEGPCDCLNV EPMQYDRFLV LSLGTGSQKQ EMKYRLMKQL NGPLSWVSTT NGGTPLIDAF SQASADMVDF HISSVVRALN
301: SEHNYLRIQD DTLTGVDKAT MKNLDDLVKV GESLLKKPVS KINLKTGVYE PVKSYQTNEE ALKRYIKIPY ISRKLLI

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.