Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G069130.5 | Barley | cytosol | 79.26 | 42.47 |
| HORVU2Hr1G037280.1 | Barley | cytosol | 44.7 | 37.6 |
| VIT_18s0001g10930.t01 | Wine grape | cytosol | 52.07 | 36.1 |
| HORVU7Hr1G113030.2 | Barley | plastid | 43.32 | 36.02 |
| VIT_18s0001g10900.t01 | Wine grape | cytosol | 32.26 | 34.83 |
| Bra000578.1-P | Field mustard | cytosol | 54.84 | 29.38 |
| CDY21469 | Canola | cytosol, peroxisome, vacuole | 54.84 | 29.24 |
| VIT_18s0001g10850.t01 | Wine grape | cytosol | 55.3 | 29.06 |
| VIT_18s0001g10910.t01 | Wine grape | cytosol | 54.84 | 28.81 |
| VIT_18s0001g10870.t01 | Wine grape | cytosol | 54.84 | 28.81 |
| CDX83197 | Canola | cytosol | 53.46 | 28.5 |
| AT2G26560.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 53.0 | 28.26 |
| KRH05708 | Soybean | cytosol | 48.39 | 27.85 |
| KRH15338 | Soybean | cytosol | 51.15 | 27.21 |
| KRH15334 | Soybean | cytosol | 51.15 | 27.21 |
| KRH05709 | Soybean | cytosol | 51.15 | 27.21 |
| VIT_18s0001g10830.t01 | Wine grape | mitochondrion, plasma membrane, plastid | 53.92 | 25.43 |
| HORVU5Hr1G119810.5 | Barley | cytosol | 43.32 | 24.35 |
| HORVU2Hr1G029000.2 | Barley | cytosol | 45.62 | 24.03 |
| HORVU5Hr1G119820.1 | Barley | plastid | 43.32 | 23.68 |
| HORVU7Hr1G006840.3 | Barley | cytosol | 30.88 | 23.1 |
| HORVU1Hr1G069200.2 | Barley | cytosol | 42.86 | 22.91 |
| HORVU1Hr1G012140.1 | Barley | plastid | 42.86 | 22.79 |
| HORVU4Hr1G075070.7 | Barley | plastid | 45.16 | 22.53 |
| HORVU4Hr1G074970.1 | Barley | mitochondrion | 43.78 | 22.51 |
| HORVU7Hr1G113080.1 | Barley | cytosol | 45.62 | 21.2 |
| HORVU3Hr1G004220.4 | Barley | cytosol, plastid | 46.54 | 21.04 |
| GSMUA_Achr11P... | Banana | cytosol | 31.8 | 20.41 |
| HORVU7Hr1G036460.1 | Barley | plasma membrane | 42.86 | 20.35 |
| HORVU3Hr1G101170.1 | Barley | mitochondrion, plastid | 14.29 | 15.42 |
| HORVU0Hr1G008670.3 | Barley | cytosol | 27.65 | 14.85 |
| HORVU4Hr1G050060.10 | Barley | plastid | 17.51 | 14.73 |
| HORVU6Hr1G001990.1 | Barley | cytosol | 30.41 | 14.67 |
| HORVU2Hr1G126660.1 | Barley | cytosol, nucleus | 37.79 | 14.56 |
| HORVU6Hr1G027900.2 | Barley | cytosol | 20.74 | 13.12 |
| HORVU2Hr1G060260.1 | Barley | plastid | 16.59 | 13.09 |
| HORVU5Hr1G103060.1 | Barley | mitochondrion | 26.27 | 12.0 |
| HORVU5Hr1G093250.4 | Barley | cytosol | 23.04 | 11.11 |
| HORVU2Hr1G126570.1 | Barley | extracellular | 17.05 | 10.36 |
| HORVU5Hr1G011400.6 | Barley | mitochondrion | 17.51 | 8.48 |
| HORVU7Hr1G106600.4 | Barley | cytosol | 2.76 | 2.33 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G019140.24 | EnsemblPlantsGene:HORVU4Hr1G019140 | Gene3D:3.40.1090.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0016042 | GO:GO:0016787 | InterPro:Acyl_Trfase/lysoPLipase |
| InterPro:IPR002641 | InterPro:PNPLA_dom | PANTHER:PTHR32176 | PANTHER:PTHR32176:SF6 | PFAM:PF01734 | PFscan:PS51635 |
| SEG:seg | SUPFAM:SSF52151 | UniParc:UPI000B4781F3 | UniProt:A0A287NFY9 | MapMan:35.1 | : |
Description
Patatin [Source:UniProtKB/TrEMBL;Acc:A0A287NFY9]
Coordinates
chrchr4H:-:89855984..89858881
Molecular Weight (calculated)
24429.3 Da
IEP (calculated)
10.123
GRAVY (calculated)
-0.035
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: METRKHILCR HPPTYGNLIT ILSIDGGGIR GIISGVALAF LESELQKLDG AEARLADYFD VLAGTSTRGP VTTLLTIPNK KRRPVFAAKD IQAFYMDHAP
101: RIFPQLRGAF GRIMRILRSF SGPCYDGKYL HEVVRKKLGS GRLHQTLTNV VIPTFDIRRL QSIMFLSYEG EDMYEAEVKK KKKSTMDALL SDICLLITSR
201: LKILMETPRS LILLMGE
101: RIFPQLRGAF GRIMRILRSF SGPCYDGKYL HEVVRKKLGS GRLHQTLTNV VIPTFDIRRL QSIMFLSYEG EDMYEAEVKK KKKSTMDALL SDICLLITSR
201: LKILMETPRS LILLMGE
001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI
Arabidopsis Description
PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.