Factsheet for VIT_18s0001g10830.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid

Predictor Summary:

plastid 3
vacuole 4
mitochondrion 3
extracellular 2
endoplasmic reticulum 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	vacuole
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g10830.t01
VIT_18s0001g10850.t01
VIT_18s0001g10870.t01
VIT_18s0001g10900.t01
VIT_18s0001g10910.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26560.1	VIT_18s0001g10830.t01	AT2G26560.1	21798944
AT2G26560.1	VIT_18s0001g10850.t01	AT2G26560.1	21798944
AT2G26560.1	VIT_18s0001g10870.t01	AT2G26560.1	21798944
AT2G26560.1	VIT_18s0001g10900.t01	AT2G26560.1	21798944
AT2G26560.1	VIT_18s0001g10910.t01	AT2G26560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g10900.t01	Wine grape	cytosol	41.52	95.02
VIT_18s0001g10910.t01	Wine grape	cytosol	84.57	94.19
VIT_18s0001g10870.t01	Wine grape	cytosol	84.35	93.95
VIT_18s0001g10850.t01	Wine grape	cytosol	84.13	93.7
TraesCS5D01G249800.1	Wheat	cytosol	60.87	69.14
HORVU5Hr1G069130.5	Barley	cytosol	60.87	69.14
AT2G26560.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	60.65	68.55
Zm00001d005911_P001	Maize	cytosol	59.78	68.41
TraesCS5A01G243200.1	Wheat	cytosol	60.22	68.4
VIT_18s0001g10880.t01	Wine grape	cytosol	60.22	68.23
Bra000578.1-P	Field mustard	cytosol	60.0	68.15
CDX83197	Canola	cytosol	60.22	68.06
CDY21469	Canola	cytosol, peroxisome, vacuole	60.22	68.06
VIT_18s0001g11010.t01	Wine grape	cytosol	60.0	67.98
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	60.0	67.98
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	60.0	67.98
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	59.78	67.73
TraesCS5B01G241100.2	Wheat	cytosol	60.0	67.65
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	57.39	67.52
KXG35787	Sorghum	cytosol	57.61	67.43
VIT_18s0001g10930.t01	Wine grape	cytosol	45.65	67.09
Os09t0462400-00	Rice	cytosol	49.57	66.67
GSMUA_Achr11P...	Banana	cytosol	48.91	66.57
VIT_07s0031g00860.t01	Wine grape	cytosol	58.48	65.93
KRH15338	Soybean	cytosol	56.52	63.73
KRH15334	Soybean	cytosol	56.3	63.48
VIT_00s0567g00050.t01	Wine grape	cytosol	29.35	63.38
VIT_18s0001g10920.t01	Wine grape	extracellular	59.35	62.61
VIT_07s0031g00870.t01	Wine grape	cytosol	55.22	62.41
VIT_00s0567g00060.t01	Wine grape	cytosol	50.65	62.3
KRH05709	Soybean	cytosol	54.78	61.76
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	53.91	61.69
HORVU4Hr1G050060.10	Barley	plastid	34.57	61.63
HORVU3Hr1G101170.1	Barley	mitochondrion, plastid	26.74	61.19
HORVU2Hr1G060260.1	Barley	plastid	36.3	60.73
KRH05708	Soybean	cytosol	49.35	60.21
GSMUA_Achr9P27010_001	Banana	cytosol	54.35	58.28
GSMUA_Achr7P12940_001	Banana	cytosol	57.83	55.88
VIT_00s0567g00040.t01	Wine grape	cytosol	19.35	54.94
HORVU4Hr1G019140.24	Barley	cytosol	25.43	53.92
VIT_07s0005g01860.t01	Wine grape	cytosol	35.0	42.37
VIT_07s0005g01890.t01	Wine grape	mitochondrion	35.0	42.26
VIT_07s0005g01880.t01	Wine grape	plastid	34.35	41.58
VIT_07s0005g01840.t01	Wine grape	cytosol, mitochondrion, plastid	35.0	37.97
VIT_07s0151g01130.t01	Wine grape	cytosol	23.04	27.53
VIT_13s0019g04200.t01	Wine grape	cytosol	26.52	26.64
VIT_10s0092g00150.t01	Wine grape	cytosol	23.26	25.06

Protein Annotations

EntrezGene:100241962	wikigene:100241962	Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	InterPro:Acyl_Trfase/lysoPLipase	ProteinID:CBI19544
ProteinID:CBI19544.3	UniProt:E0CP87	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004620
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0047372
InterPro:IPR002641	EntrezGene:LOC100241962	wikigene:LOC100241962	PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635
PANTHER:PTHR32176	PANTHER:PTHR32176:SF6	SUPFAM:SSF52151	TIGR:TC67255	UniParc:UPI0001BE1388	ArrayExpress:VIT_18s0001g10830
EnsemblPlantsGene:VIT_18s0001g10830	EnsemblPlants:VIT_18s0001g10830.t01	unigene:Vvi.8335	RefSeq:XP_002284571	RefSeq:XP_002284571.1	SEG:seg

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:E0CP87]

Coordinates

chr18:-:9101815..9105297

Molecular Weight (calculated)

50453.4 Da

IEP (calculated)

5.618

GRAVY (calculated)

-0.117

Length

460 amino acids

Sequence
(BLAST)

001: MIFSLMDVKL IFKYQLTTIR STCGKTSQIS LFLSSMTQVH TFIPRLLMEE EPKSPLQPPT YGNLITILSI DGGGIRGLIP GTVLGFLESE LQKLDGEDAR
101: ISDYFDVIAG TSTGGLVTAM LTTPNENTGR PLFSAKDIKD FYLEHCPMIF PQHSYVPIPY VTKAVTSLSG PKYDGKYLHN LVKEKLGETQ LHQTLTNVVI
201: PTFDIKCLQP TIFSTYQVKS RPSLDALLSD ICIGTSAAPT YLPAHYFETK DPTGRVREFN LIDGGVAANN PALVAIGEVT QEIIRGSPDF FPIKPMDYGR
301: FLVISLGTGS SKAEEKYNAD QAAEWGLLGW LTSGGSTPLV DVFTQASGDM VDLHLSQVFQ ALHSEKSYLR IQDDTLSGIT SSVDIATKEN LDDLVKIGEE
401: LLKKRVSRVN LDTGVFEPSN HETNEEALTS FARLLSQEKQ RRDARSPHGH AAASKGVVVV

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.