Factsheet for VIT_07s0005g01880.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1
vacuole 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g01840.t01	Wine grape	cytosol, mitochondrion, plastid	80.79	72.41
VIT_07s0005g01890.t01	Wine grape	mitochondrion	63.16	62.99
VIT_07s0005g01860.t01	Wine grape	cytosol	62.37	62.37
VIT_18s0001g10930.t01	Wine grape	cytosol	36.84	44.73
VIT_00s0567g00050.t01	Wine grape	cytosol	24.21	43.19
VIT_18s0001g10900.t01	Wine grape	cytosol	22.37	42.29
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	42.11	40.92
VIT_18s0001g11010.t01	Wine grape	cytosol	43.68	40.89
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	42.89	40.15
VIT_18s0001g10880.t01	Wine grape	cytosol	42.89	40.15
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	42.63	39.9
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	42.11	39.41
VIT_18s0001g10850.t01	Wine grape	cytosol	42.63	39.23
VIT_00s0567g00060.t01	Wine grape	cytosol	38.16	38.77
VIT_18s0001g10870.t01	Wine grape	cytosol	41.84	38.5
VIT_18s0001g10910.t01	Wine grape	cytosol	41.84	38.5
VIT_07s0031g00860.t01	Wine grape	cytosol	39.47	36.76
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	38.68	36.57
VIT_18s0001g10920.t01	Wine grape	extracellular	41.84	36.47
VIT_07s0031g00870.t01	Wine grape	cytosol	38.95	36.36
VIT_00s0567g00040.t01	Wine grape	cytosol	15.26	35.8
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	41.58	34.35
VIT_10s0092g00150.t01	Wine grape	cytosol	26.58	23.65
VIT_13s0019g04200.t01	Wine grape	cytosol	27.89	23.14
VIT_07s0151g01130.t01	Wine grape	cytosol	20.53	20.26

Protein Annotations

EntrezGene:100246935	wikigene:100246935	Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	InterPro:Acyl_Trfase/lysoPLipase	ProteinID:CBI36987
ProteinID:CBI36987.3	UniProt:D7U2M1	EMBL:FN596502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004620
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0047372
InterPro:IPR002641	EntrezGene:LOC100246935	wikigene:LOC100246935	PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635
PANTHER:PTHR32176	PANTHER:PTHR32176:SF4	SUPFAM:SSF52151	UniParc:UPI0001BE46EC	ArrayExpress:VIT_07s0005g01880	EnsemblPlantsGene:VIT_07s0005g01880
EnsemblPlants:VIT_07s0005g01880.t01	RefSeq:XP_002271963	RefSeq:XP_002271963.1	SEG:seg	:	:

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:D7U2M1]

Coordinates

chr7:+:4336482..4338595

Molecular Weight (calculated)

41721.7 Da

IEP (calculated)

9.631

GRAVY (calculated)

-0.365

Length

380 amino acids

Sequence
(BLAST)

001: MASTQGSSPR TNGKVITILS IDGGGVRGII PAVILYSLEA ELQRIDGPNA RIADYFDVIA GTSTGSIVTA LLTTPYTPPN PPANASKTNP PPNASITNRP
101: REAKEIPEFY KKHGPAIFQK RKAPHNRYTT VDEEVGTIRL ADTLTDVLIP AYDIEHRKLV TFSSHQERNK VPKSSLPLRQ AVLGSAAAPT YFPRHHFQAD
201: GKIYNLVDGG MAANNPTLLA IREAINIFGS RDDNRYLVIS LGTGAEGDHH DFVNLGSPID WILDLKRGIP PLVSLLFETS ADMVDTYTSI FLGGGQNSRH
301: QFLRIQDYTL NPKQLKMDKA TEDNFNNLIN IAKQLLEKPV SFPSSWIGLE PTTTNRDALG RFANDLSKIR GDAAKKLSRR

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.