Factsheet for VIT_18s0001g10950.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 2
vacuole 2
mitochondrion 2
plasma membrane 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	99.75	99.75
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	95.32	95.32
VIT_18s0001g11010.t01	Wine grape	cytosol	93.84	93.84
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	89.41	92.84
VIT_18s0001g10880.t01	Wine grape	cytosol	89.66	89.66
VIT_18s0001g10920.t01	Wine grape	extracellular	87.19	81.19
KRH51959	Soybean	nucleus	72.66	71.26
Solyc04g079240.2.1	Tomato	nucleus	71.92	70.87
Solyc04g079250.2.1	Tomato	cytosol	69.46	69.63
KRH15336	Soybean	cytosol	69.7	69.36
KRH05707	Soybean	cytosol	69.7	69.19
KRH05706	Soybean	cytosol, extracellular, nucleus	64.04	69.15
Solyc04g079260.2.1	Tomato	cytosol	68.97	68.97
VIT_07s0031g00860.t01	Wine grape	cytosol	67.73	67.4
VIT_18s0001g10850.t01	Wine grape	cytosol	68.47	67.31
VIT_18s0001g10870.t01	Wine grape	cytosol	67.73	66.59
VIT_18s0001g10910.t01	Wine grape	cytosol	67.49	66.34
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	63.05	63.68
VIT_18s0001g10900.t01	Wine grape	cytosol	31.03	62.69
KRH15337	Soybean	cytosol	25.37	62.42
VIT_07s0031g00870.t01	Wine grape	cytosol	62.56	62.41
VIT_18s0001g10930.t01	Wine grape	cytosol	47.78	61.98
VIT_00s0567g00050.t01	Wine grape	cytosol	32.27	61.5
VIT_00s0567g00060.t01	Wine grape	cytosol	55.66	60.43
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	67.98	60.0
GSMUA_Achr3P06850_001	Banana	cytosol	59.11	58.82
VIT_00s0567g00040.t01	Wine grape	cytosol	21.67	54.32
VIT_07s0005g01880.t01	Wine grape	plastid	40.15	42.89
VIT_07s0005g01890.t01	Wine grape	mitochondrion	39.9	42.52
VIT_07s0005g01860.t01	Wine grape	cytosol	39.41	42.11
VIT_07s0005g01840.t01	Wine grape	cytosol, mitochondrion, plastid	39.9	38.21
VIT_13s0019g04200.t01	Wine grape	cytosol	31.53	27.95
VIT_07s0151g01130.t01	Wine grape	cytosol	25.37	26.75
VIT_10s0092g00150.t01	Wine grape	cytosol	27.83	26.46

Protein Annotations

EntrezGene:100260810	wikigene:100260810	Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	EMBL:AM485018	InterPro:Acyl_Trfase/lysoPLipase
ProteinID:CAN81920	ProteinID:CAN81920.1	ProteinID:CBI19556	ProteinID:CBI19556.3	UniProt:E0CP99	EMBL:FN595227
GO:GO:0003674	GO:GO:0003824	GO:GO:0004620	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016020
GO:GO:0016042	GO:GO:0016787	GO:GO:0047372	InterPro:IPR002641	EntrezGene:LOC100260810	wikigene:LOC100260810
PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32176	PANTHER:PTHR32176:SF6	SUPFAM:SSF52151
UniParc:UPI00015C775E	ArrayExpress:VIT_18s0001g10950	EnsemblPlantsGene:VIT_18s0001g10950	EnsemblPlants:VIT_18s0001g10950.t01	RefSeq:XP_002282432	RefSeq:XP_002282432.1

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:E0CP99]

Coordinates

chr18:-:9265011..9267176

Molecular Weight (calculated)

44868.1 Da

IEP (calculated)

7.610

GRAVY (calculated)

-0.220

Length

406 amino acids

Sequence
(BLAST)

001: MEKSLLPQIQ PPTYGNLVTI LSIDGGGIRG IIPATILARL ETRLQELDGD DARIADYFDV IAGTSTGGIV TAMLTAPDDQ KRPLFAAKDI KPFYLEHGPK
101: IFPQTRGIFG WIMSILRSIV GPKYDGKYLK RLIKEKLGGT RLHETLTSVV IPTFDIKSLQ PTIFSTYEVK RSPCLDAPLA DICIGSSAAP TYFPAYFFKN
201: QDKEGKTQEF DLIDGGVAAN NPALVAITQV TKQVFDRNPD FFPIKPMDFG RFLVISIGTG SPKSEQKYNA KMASKWGVLG WLLHGGSTPL VDVFMQASAD
301: MVDFHISMVF QALHSEDNYL RIQDDTLRGK DASVDVTTEE NLDNLVKIGE RLLKKPVSRV NLETGLSEPV ENGGTNEEAL KRFATLLSDE KRLRDARSPN
401: PKKSLK

Best Arabidopsis Sequence Match ( AT4G37050.1 )
(BLAST)

001: MDTERGSISS SEISRTAHLQ DRTVACLPPS YGQLVTILSI DGGGIRGIIP GTILAYLESQ LQELDGEEAR LVDYFDVISG TSTGGLIVAM LTAQDQSGGH
101: SRNSNRPLFE AKEIVPFYLK HSPKIFPQPR GIFCGWGETI VRLVGGPKFN GKYLHDLVEG FLGDTKLTQS LTNVVIPCFD IKKLQPVIFS SYQAVNNQAM
201: NAKLSDICIS TSAAPTFFPA HRFTNEDSEG IKHEFNLIDG GIAANNPTLC AIAEVTKQII KKNPVMGDIS PLDFTRFLVI SIGTGSIRNQ EKYNAKMASK
301: WGLMCWVFES GSTPILDCYS EAIHDMVDYQ SSVVFQALRS EKNYLRIDDD SLKGDLGSVD ISTEKNMEGL VEVGEALLKK RVSRVNLESG HYQPISENVT
401: NEEALKRFAK VLSEERKLRE SRSPKLKI

Arabidopsis Description

PLP3Patatin-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O23181]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.