Factsheet for VIT_07s0005g01890.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 1
plasma membrane 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g01860.t01	Wine grape	cytosol	93.7	93.95
VIT_07s0005g01880.t01	Wine grape	plastid	62.99	63.16
VIT_07s0005g01840.t01	Wine grape	cytosol, mitochondrion, plastid	64.3	57.78
VIT_00s0567g00050.t01	Wine grape	cytosol	25.98	46.48
VIT_18s0001g10930.t01	Wine grape	cytosol	34.91	42.49
VIT_18s0001g10900.t01	Wine grape	cytosol	22.05	41.79
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	41.73	40.66
VIT_18s0001g10850.t01	Wine grape	cytosol	43.57	40.19
VIT_18s0001g11010.t01	Wine grape	cytosol	42.52	39.9
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	42.52	39.9
VIT_18s0001g10880.t01	Wine grape	cytosol	42.26	39.66
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	42.26	39.66
VIT_00s0567g00060.t01	Wine grape	cytosol	38.85	39.57
VIT_18s0001g10870.t01	Wine grape	cytosol	42.26	38.98
VIT_18s0001g10910.t01	Wine grape	cytosol	42.26	38.98
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	41.47	38.92
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	39.63	37.56
VIT_07s0031g00860.t01	Wine grape	cytosol	40.16	37.5
VIT_07s0031g00870.t01	Wine grape	cytosol	39.11	36.61
VIT_18s0001g10920.t01	Wine grape	extracellular	41.21	36.01
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	42.26	35.0
VIT_00s0567g00040.t01	Wine grape	cytosol	12.6	29.63
VIT_13s0019g04200.t01	Wine grape	cytosol	28.35	23.58
VIT_07s0151g01130.t01	Wine grape	cytosol	20.73	20.52
VIT_10s0092g00150.t01	Wine grape	cytosol	22.31	19.91

Protein Annotations

EntrezGene:100264086	wikigene:100264086	Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	InterPro:Acyl_Trfase/lysoPLipase	ProteinID:CCB60036
ProteinID:CCB60036.1	UniProt:F6HZC1	EMBL:FN596502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004620
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0047372
InterPro:IPR002641	EntrezGene:LOC100264086	wikigene:LOC100264086	PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635
PANTHER:PTHR32176	PANTHER:PTHR32176:SF4	SUPFAM:SSF52151	UniParc:UPI000210A2AC	ArrayExpress:VIT_07s0005g01890	EnsemblPlantsGene:VIT_07s0005g01890
EnsemblPlants:VIT_07s0005g01890.t01	RefSeq:XP_002272043	RefSeq:XP_002272043.1	:	:	:

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:F6HZC1]

Coordinates

chr7:+:4347959..4350864

Molecular Weight (calculated)

41923.1 Da

IEP (calculated)

6.113

GRAVY (calculated)

-0.201

Length

381 amino acids

Sequence
(BLAST)

001: MASTQGSSPR TNRKVITILS IDGGGVRGII PAVILSALEA ELQRLDGPDA RIADYFDLIA GTSTGSIVTT FLTTPYPLPN ASNGSTTNRP REAKDIQKFY
101: IEHGPEIFAK KEDPAQTSKS ESFLDGLKHL IVQGVEKVLE YKYRPSSLSE KVDEQLGKIR LADTLTNILV PAYDIQHLKL VTFSSHQARK TDSSVKLRDV
201: VMSSAAAPVY FPSHNFKADG RMYNLVDGGV AANNPTLLAI QEAAHIFGNR DYNYLILSLG TCSEEEEHQN FIHLTGPLPW MIDLKRVTPP LANVLFKTSA
301: DMVDAYTLFV LGVGGRISSQ NFLRIQDNTL KPEQLTMDDA SQENFDSLID IGQRLLEKPV SFPSSVIGLQ PVTTNRDALM R

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.