Factsheet for VIT_13s0019g04200.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g056030.2.1	Tomato	cytosol	79.48	78.11
KRH34879	Soybean	cytosol	78.82	77.97
PGSC0003DMT400060317	Potato	cytosol	78.82	77.47
CDX74862	Canola	cytosol	67.47	68.82
CDY07662	Canola	cytosol	70.31	67.65
CDY24974	Canola	cytosol	70.09	67.44
Bra000125.1-P	Field mustard	cytosol	70.74	67.08
KRG91895	Soybean	cytosol, extracellular, mitochondrion, plastid	79.48	66.91
CDX67618	Canola	mitochondrion	67.9	66.74
CDY07512	Canola	mitochondrion	68.78	66.32
AT3G54950.1	Thale cress	mitochondrion	70.31	65.98
Bra003202.1-P	Field mustard	mitochondrion	68.56	65.97
GSMUA_Achr8P18860_001	Banana	cytosol	47.38	65.36
CDY56960	Canola	mitochondrion	69.21	65.23
CDX73423	Canola	mitochondrion	69.87	65.17
CDY44633	Canola	cytosol	69.0	65.02
AT2G39220.1	Thale cress	cytosol	70.31	64.53
Bra007119.1-P	Field mustard	mitochondrion	69.87	64.52
Bra005058.1-P	Field mustard	cytosol	68.56	64.48
GSMUA_Achr5P03830_001	Banana	cytosol	60.48	63.82
GSMUA_Achr5P18500_001	Banana	cytosol	53.93	63.66
GSMUA_Achr2P12330_001	Banana	cytosol	55.02	63.0
GSMUA_Achr11P...	Banana	mitochondrion	39.08	62.15
CDY43526	Canola	nucleus	63.97	60.04
CDX68587	Canola	nucleus	65.07	59.72
AT4G29800.2	Thale cress	cytosol	67.9	59.13
EER95163	Sorghum	cytosol	56.77	56.52
Zm00001d028482_P001	Maize	cytosol	55.9	55.65
Os03t0254400-01	Rice	cytosol	56.11	54.8
TraesCS4D01G221300.1	Wheat	cytosol	54.59	54.47
TraesCS4B01G221000.1	Wheat	cytosol	54.59	54.35
TraesCS4A01G083200.1	Wheat	cytosol	54.59	54.11
VIT_10s0092g00150.t01	Wine grape	cytosol	47.38	50.82
HORVU0Hr1G008670.3	Barley	cytosol	40.39	45.79
VIT_07s0151g01130.t01	Wine grape	cytosol	38.43	45.71
VIT_00s0567g00050.t01	Wine grape	cytosol	17.47	37.56
VIT_00s0567g00060.t01	Wine grape	cytosol	25.98	31.82
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	27.95	31.53
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	27.73	31.28
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	27.73	31.28
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	26.42	30.95
VIT_18s0001g11010.t01	Wine grape	cytosol	27.07	30.54
VIT_18s0001g10880.t01	Wine grape	cytosol	26.86	30.3
VIT_07s0031g00870.t01	Wine grape	cytosol	26.64	29.98
VIT_18s0001g10900.t01	Wine grape	cytosol	13.1	29.85
VIT_18s0001g10850.t01	Wine grape	cytosol	26.86	29.78
VIT_18s0001g10870.t01	Wine grape	cytosol	25.98	28.81
VIT_18s0001g10910.t01	Wine grape	cytosol	25.98	28.81
VIT_07s0005g01860.t01	Wine grape	cytosol	23.8	28.68
VIT_18s0001g10930.t01	Wine grape	cytosol	19.43	28.43
VIT_07s0031g00860.t01	Wine grape	cytosol	25.33	28.43
VIT_07s0005g01890.t01	Wine grape	mitochondrion	23.58	28.35
VIT_18s0001g10920.t01	Wine grape	extracellular	26.64	27.98
VIT_07s0005g01880.t01	Wine grape	plastid	23.14	27.89
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	24.45	27.86
VIT_00s0567g00040.t01	Wine grape	cytosol	9.61	27.16
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	26.64	26.52
VIT_07s0005g01840.t01	Wine grape	cytosol, mitochondrion, plastid	23.8	25.71

Protein Annotations

EntrezGene:100246118	wikigene:100246118	Gene3D:3.40.1090.10	MapMan:5.7.2.2.4	InterPro:Acyl_Trfase/lysoPLipase	ProteinID:CCB56191
ProteinID:CCB56191.1	UniProt:F6HNH2	EMBL:FN595998	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016042	GO:GO:0016787	InterPro:IPR002641
EntrezGene:LOC100246118	wikigene:LOC100246118	PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32241
SUPFAM:SSF52151	TIGR:TC68417	UniParc:UPI00019848D4	ArrayExpress:VIT_13s0019g04200	EnsemblPlantsGene:VIT_13s0019g04200	EnsemblPlants:VIT_13s0019g04200.t01
unigene:Vvi.10709	RefSeq:XP_002275108	RefSeq:XP_002275108.1	RefSeq:XP_010658410.1	RefSeq:XP_019079893.1	SEG:seg

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:F6HNH2]

Coordinates

chr13:-:5537565..5543145

Molecular Weight (calculated)

49733.1 Da

IEP (calculated)

7.312

GRAVY (calculated)

-0.297

Length

458 amino acids

Sequence
(BLAST)

001: MACNLQSEMQ EPSIDTDKLS YEIFSILESK FLFGYDDQKL WIPKQIETKS EVSTPPPPDN GVSAIKNQRG KICILSIDGG GMRGILSGRA LAYLEQALKT
101: KSGNPQARIA DYFDVAAGAG VGGIFTAMLF GTKDNSRPIF QAEDTWKFLA EQGKRCYRSS SGSGSGGGSF LRRILRGGSS GSAASGLEKA MKEAFAENGR
201: SLTLKDTLKP VLIPCYDLSS SAPFLFSRAD ALETDSFDFR LWEVCRATSA EPAIFEPVSM RSVDGQTRCV AIDGGLAMSN PTAAAITHVL HNKQEFPFVR
301: GVEDLLVLSL GTGQLLEGSY DYDQVKNWKA KDWARPMARI SGDGAADMVD HSVAMAFGQS RSSNYVRIQA NGSTLGRCGA NMDTDPSPSN VKMLNGIAEE
401: MLKQKNVESV LFGGKRIGEQ SNFEKLDWFA GELVLEHQRR SCRIAPTVAF KQATPKST

Best Arabidopsis Sequence Match ( AT3G54950.1 )
(BLAST)

001: MHRVRNKPVK STATASVKHL IKQRGGDGAT AASKSANDYN NNDSLLTDMQ EPSIDTDKLS YEIFSILESK FLFGYDDSKP EPANSVVAGS IKNQRGKICI
101: LSIDGGGMRG ILPGKALAYL EHALKSKSGD PNARIADYFD VAAGSGIGGI YTAMLFGSRD GNRPIFKADD TWQFLTRNAK GLYGGAGILK RVLRTGSGCC
201: SGTAKLKKVM KESFSELTLK DTLKPVLIPC YDLKSSGPFL FSRADALETD GYDFRLSEVC RATWAEPGVF EPVEMKSVDG QTKCVAVGGG LAMSNPTAAA
301: ITHVLHNKQE FPFVRGVEDL LVLSLGMGQL LDVSYEYDRI IKWKAKHWAR PAALISNDGA ADTVDQAVAM AFGHCRSSNY VRIQANGSNL GPWSPNMDTD
401: PSGSNVNMLM GVAEEMLKQK NVESVLFGGK RIDEQSNFEK LDWLAGELVL EHQRRNSRIA PTVAFKQSVH RADQKTSDKD IGVTARER

Arabidopsis Description

PLP7Patatin-like protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV43]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.