Factsheet for Bra005058.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74862	Canola	cytosol	89.73	97.33
Bra000125.1-P	Field mustard	cytosol	89.32	90.06
AT2G39220.1	Thale cress	cytosol	86.24	84.17
Bra003202.1-P	Field mustard	mitochondrion	73.72	75.42
Bra007119.1-P	Field mustard	mitochondrion	74.95	73.59
VIT_13s0019g04200.t01	Wine grape	cytosol	64.48	68.56
KRH34879	Soybean	cytosol	64.27	67.6
Solyc05g056030.2.1	Tomato	cytosol	61.19	63.95
PGSC0003DMT400060317	Potato	cytosol	60.99	63.73
GSMUA_Achr5P03830_001	Banana	cytosol	54.83	61.52
GSMUA_Achr2P12330_001	Banana	cytosol	49.69	60.5
GSMUA_Achr8P18860_001	Banana	cytosol	41.07	60.24
GSMUA_Achr5P18500_001	Banana	cytosol	46.82	58.76
KRG91895	Soybean	cytosol, extracellular, mitochondrion, plastid	64.27	57.54
GSMUA_Achr11P...	Banana	mitochondrion	33.06	55.9
EER95163	Sorghum	cytosol	50.92	53.91
Zm00001d028482_P001	Maize	cytosol	50.51	53.48
TraesCS4B01G221000.1	Wheat	cytosol	49.08	51.96
TraesCS4D01G221300.1	Wheat	cytosol	48.87	51.85
Os03t0254400-01	Rice	cytosol	49.9	51.81
TraesCS4A01G083200.1	Wheat	cytosol	48.46	51.08
HORVU0Hr1G008670.3	Barley	cytosol	35.93	43.32
Bra007735.1-P	Field mustard	cytosol	32.65	41.3
Bra040428.1-P	Field mustard	cytosol	32.24	40.57
Bra011730.1-P	Field mustard	cytosol	24.23	28.92
Bra011731.1-P	Field mustard	cytosol, peroxisome, plastid	23.82	28.64
Bra011732.1-P	Field mustard	cytosol	22.38	28.53
Bra017799.1-P	Field mustard	cytosol	24.02	28.4
Bra017798.1-P	Field mustard	cytosol	23.41	27.94
Bra000578.1-P	Field mustard	cytosol	23.0	27.65

Protein Annotations

EnsemblPlants:Bra005058.1	EnsemblPlants:Bra005058.1-P	EnsemblPlantsGene:Bra005058	Gene3D:3.40.1090.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016042	GO:GO:0016787
InterPro:Acyl_Trfase/lysoPLipase	InterPro:IPR002641	InterPro:PNPLA_dom	PANTHER:PTHR32241	PFAM:PF01734	PFscan:PS51635
SUPFAM:SSF52151	UniParc:UPI00025474DF	UniProt:M4CLH1	MapMan:5.7.2.2.4	:	:

Description

AT2G39220 (E=3e-239) PLP6, PLA IIB | PLP6 (PATATIN-LIKE PROTEIN 6); nutrient reservoir

Coordinates

chrA05:+:3210934..3212610

Molecular Weight (calculated)

53240.4 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.287

Length

487 amino acids

Sequence
(BLAST)

001: MQRVHNKPVD SIGKSPSATV KHHLIKQSSG GVTAVTAADM QEPSIDTDKL SYEIFSILES KFLFGYEDPS PEQETSPTTV AEPLNGVVQG SVKNQRGKVC
101: VLSIDGGGMR GIIPGKALAY LEQALKSKSG DPNARIADYF DVASGSGIGG VFTAMLFASS DGDRPIFNAD DTWRFLANNG KRFYKPASGT GRILNRVMKT
201: GSGSKKLEKS MKESFAEMTL KDTLKPVLIP CYDLTSSAPL LFSRADALET DGYDFKLWEV CRATWAEPGV FEPVEMRSVD GKTRCVAVDG GLAMSNPTAA
301: AITHVLHNKE EFPFVRGVED LLVLSLGTGQ LVDVKYECDQ VMKWKAKQWA RPAVRISADG AADTVDQAVS MAFGQCRRSN YVRIQADGSS FGPCRPDIDT
401: DASTSNVNML VGVAEEMLKQ KNVESVMFSG KKISEESNFE KLDWLAGELV LEHQRRSCRI APTVAFKQSS DRRTVQKTIF KDIDCMF

Best Arabidopsis Sequence Match ( AT2G39220.1 )
(BLAST)

001: MLTTMQRVHN KPIDSIGGFK HLVKQSNGGD GGVTATDMQE PSIETDKLSY EIFSILESKF LFGYDDDLKL MESRSRDPSP EQETASPAMV EALNGVVPGT
101: VKNQRGKVCV LSIDSGGMRG IIPGKALAYL EHALKSKSGD PNARIADYFD VASGSGIGGI FTAMLFASSD GNRPIFKAED TWRFLAMKGK SFYNKSPPGI
201: LNRVMKTGSG GSGGSGSKLE KAMKESFEEL TLKDTLKPVL IPCYDLTSSA PFLFSRADAL ETDGYDFKLW EVCRATWAEP GVFEPVEMRS VDGKTRCVAV
301: DGGLAMSNPT AAAITHVLHN KQEFPFVRGV EDLLVLSLGT GQLVDVKYDC DKVMKWKAKH WARPAVRISA DGAADTVDQA VSMAFGQCRR SNYVRIQANG
401: SSFGPCKPNI DTDASPSNVN MLVGVAEEML KQKNAESVLF GGKKINEESN YEKLDWLAGE LVLEHQRRSC RIAPTVAFKQ SGDRRVDQQT IFKDIDCMF

Arabidopsis Description

PLP6Patatin-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O80959]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.