Factsheet for Solyc05g056030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
vacuole 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, vacuole
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060317	Potato	cytosol	98.28	98.28
VIT_13s0019g04200.t01	Wine grape	cytosol	78.11	79.48
KRH34879	Soybean	cytosol	72.53	73.0
CDX74862	Canola	cytosol	63.09	65.48
CDY07662	Canola	cytosol	65.67	64.29
CDY24974	Canola	cytosol	65.45	64.08
Bra000125.1-P	Field mustard	cytosol	66.09	63.77
CDX67618	Canola	mitochondrion	63.3	63.3
GSMUA_Achr5P03830_001	Banana	cytosol	58.58	62.9
AT3G54950.1	Thale cress	mitochondrion	65.67	62.7
CDY07512	Canola	mitochondrion	63.73	62.53
Bra003202.1-P	Field mustard	mitochondrion	63.73	62.4
AT2G39220.1	Thale cress	cytosol	66.52	62.12
CDX73423	Canola	mitochondrion	65.45	62.12
CDY44633	Canola	cytosol	64.59	61.93
CDY56960	Canola	mitochondrion	64.59	61.93
KRG91895	Soybean	cytosol, extracellular, mitochondrion, plastid	71.67	61.4
Bra005058.1-P	Field mustard	cytosol	63.95	61.19
GSMUA_Achr8P18860_001	Banana	cytosol	43.56	61.14
Bra007119.1-P	Field mustard	mitochondrion	64.81	60.89
GSMUA_Achr2P12330_001	Banana	cytosol	52.15	60.75
GSMUA_Achr5P18500_001	Banana	cytosol	50.0	60.05
GSMUA_Achr11P...	Banana	mitochondrion	36.48	59.03
CDY43526	Canola	nucleus	61.16	58.4
CDX68587	Canola	nucleus	61.8	57.72
AT4G29800.2	Thale cress	cytosol	62.45	55.32
EER95163	Sorghum	cytosol	53.43	54.13
Zm00001d028482_P001	Maize	cytosol	52.79	53.48
TraesCS4D01G221300.1	Wheat	cytosol	52.36	53.16
TraesCS4B01G221000.1	Wheat	cytosol	52.36	53.04
TraesCS4A01G083200.1	Wheat	cytosol	52.36	52.81
Os03t0254400-01	Rice	cytosol	53.0	52.67
Solyc10g080690.1.1	Tomato	cytosol	43.99	47.45
Solyc10g078530.1.1	Tomato	cytosol	43.13	46.21
Solyc09g065240.2.1	Tomato	cytosol	37.12	45.17
HORVU0Hr1G008670.3	Barley	cytosol	38.2	44.06
Solyc02g090490.2.1	Tomato	extracellular	28.11	31.8
Solyc02g065100.1.1	Tomato	endoplasmic reticulum, extracellular	26.39	29.93
Solyc02g090630.2.1	Tomato	cytosol	24.68	29.11
Solyc02g065090.2.1	Tomato	nucleus	26.18	29.05
Solyc04g079240.2.1	Tomato	nucleus	25.54	28.88
Solyc03g044710.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	25.11	28.54
Solyc04g079250.2.1	Tomato	cytosol	24.46	28.15
Solyc04g079260.2.1	Tomato	cytosol	24.46	28.08
Solyc02g090660.1.1	Tomato	cytosol, peroxisome, plastid	15.02	25.36
Solyc08g006860.2.1	Tomato	extracellular	20.39	24.8
Solyc04g079220.1.1	Tomato	cytosol	3.86	24.0
Solyc08g006850.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	19.1	23.61
Solyc04g079210.2.1	Tomato	cytosol	7.73	22.22

Protein Annotations

EnsemblPlants:Solyc05g056030.2.1	EnsemblPlantsGene:Solyc05g056030.2	Gene3D:3.40.1090.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016042	GO:GO:0016787	InterPro:Acyl_Trfase/lysoPLipase
InterPro:IPR002641	InterPro:PNPLA_dom	PANTHER:PTHR32241	PANTHER:PTHR32241:SF3	PFAM:PF01734	PFscan:PS51635
SUPFAM:SSF52151	UniParc:UPI0002767451	UniProt:K4C2S8	MapMan:5.7.2.2.4	:	:

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:K4C2S8]

Coordinates

chr5:+:65412221..65416421

Molecular Weight (calculated)

51212.2 Da

IEP (calculated)

7.988

GRAVY (calculated)

-0.304

Length

466 amino acids

Sequence
(BLAST)

001: MESNIISDMR LEPSIDTDKL SYEIFSILES KFLFGYDDQK LWVPKNLPSP VEDGKNDGVL TSTATENIQA IKNQRGKICI LSIDGGGMRN ILSGKALAYL
101: EQALKVKSGN PEARIADYFD VAVGSGVGGI FTAMLFSTKD QNRPVFQAED TWKLLEEQGR RIYPSKGSTS AGNGFLRRVL RGGATRSDAS GLEKVMKEAF
201: MDKKTGRSLT LKDTLKPVLI PCYDLSSTAP FLFSRADAFE SESFDFRLWE VCRATSAEPG LFEPVCMKSV DGKTGCVAVD GGLAMSNPTA AAITHVLHNK
301: QEFPFVRGVE DILVLSLGTG QLLEGSFQYE HVKKWKAKDW AKPMARISGD GAADMVDHSV AMAFGQCRSS NYVRIQANGS SFGRCGVNID ADPSPNNVKK
401: LVGIADEMLK QKNVESLLFG GKKIAEQSNF QKLDWFAGEL VQEHQRRSCR IAPTVAFKQH LTNQEK

Best Arabidopsis Sequence Match ( AT2G39220.1 )
(BLAST)

001: MLTTMQRVHN KPIDSIGGFK HLVKQSNGGD GGVTATDMQE PSIETDKLSY EIFSILESKF LFGYDDDLKL MESRSRDPSP EQETASPAMV EALNGVVPGT
101: VKNQRGKVCV LSIDSGGMRG IIPGKALAYL EHALKSKSGD PNARIADYFD VASGSGIGGI FTAMLFASSD GNRPIFKAED TWRFLAMKGK SFYNKSPPGI
201: LNRVMKTGSG GSGGSGSKLE KAMKESFEEL TLKDTLKPVL IPCYDLTSSA PFLFSRADAL ETDGYDFKLW EVCRATWAEP GVFEPVEMRS VDGKTRCVAV
301: DGGLAMSNPT AAAITHVLHN KQEFPFVRGV EDLLVLSLGT GQLVDVKYDC DKVMKWKAKH WARPAVRISA DGAADTVDQA VSMAFGQCRR SNYVRIQANG
401: SSFGPCKPNI DTDASPSNVN MLVGVAEEML KQKNAESVLF GGKKINEESN YEKLDWLAGE LVLEHQRRSC RIAPTVAFKQ SGDRRVDQQT IFKDIDCMF

Arabidopsis Description

PLP6Patatin-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O80959]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.