Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- vacuole 7
- extracellular 4
- endoplasmic reticulum 4
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002019 | Potato | golgi, vacuole | 94.05 | 94.05 |
| Solyc02g090490.2.1 | Tomato | extracellular | 72.14 | 73.54 |
| Solyc02g065100.1.1 | Tomato | endoplasmic reticulum, extracellular | 69.29 | 70.8 |
| Solyc03g044710.2.1 | Tomato | endoplasmic reticulum, golgi, vacuole | 67.62 | 69.27 |
| VIT_00s0567g00050.t01 | Wine grape | cytosol | 33.33 | 65.73 |
| VIT_00s0567g00060.t01 | Wine grape | cytosol | 56.67 | 63.64 |
| VIT_00s0567g00040.t01 | Wine grape | cytosol | 23.33 | 60.49 |
| TraesCS1A01G407900.1 | Wheat | cytosol | 30.95 | 54.62 |
| Solyc04g079210.2.1 | Tomato | cytosol | 20.95 | 54.32 |
| TraesCS4A01G345400.1 | Wheat | cytosol | 27.62 | 54.21 |
| Solyc02g090630.2.1 | Tomato | cytosol | 50.48 | 53.67 |
| TraesCS7D01G034300.1 | Wheat | mitochondrion | 52.38 | 53.27 |
| HORVU7Hr1G113030.2 | Barley | plastid | 33.1 | 53.26 |
| Solyc04g079250.2.1 | Tomato | cytosol | 51.19 | 53.09 |
| Solyc04g079260.2.1 | Tomato | cytosol | 51.19 | 52.96 |
| TraesCS7D01G491300.1 | Wheat | plastid | 32.38 | 52.92 |
| Solyc04g079240.2.1 | Tomato | nucleus | 51.9 | 52.91 |
| TraesCS4A01G449600.1 | Wheat | mitochondrion | 53.33 | 52.83 |
| HORVU2Hr1G037280.1 | Barley | cytosol | 32.38 | 52.71 |
| TraesCS4A01G450400.1 | Wheat | mitochondrion | 53.1 | 52.59 |
| TraesCS7A01G038300.1 | Wheat | mitochondrion | 53.1 | 52.59 |
| TraesCS7A01G504400.1 | Wheat | cytoskeleton, cytosol, peroxisome | 50.48 | 52.48 |
| KRH61261 | Soybean | cytosol, peroxisome, plastid | 28.1 | 52.44 |
| KXG25325 | Sorghum | plastid | 54.52 | 52.4 |
| OQU80645 | Sorghum | cytosol | 50.0 | 52.37 |
| TraesCS6A01G142200.1 | Wheat | cytosol | 40.95 | 52.28 |
| Zm00001d031811_P001 | Maize | plastid | 54.05 | 52.06 |
| Os08t0477500-01 | Rice | plasma membrane | 33.33 | 52.04 |
| TraesCS7B01G411200.1 | Wheat | plastid | 52.14 | 51.9 |
| Os08t0477100-01 | Rice | plastid | 53.1 | 51.74 |
| TraesCS7A01G504100.1 | Wheat | plastid | 51.9 | 51.66 |
| Os08t0376500-00 | Rice | plastid | 31.9 | 51.54 |
| TraesCS7D01G491900.1 | Wheat | plastid | 51.67 | 51.42 |
| HORVU5Hr1G119810.5 | Barley | cytosol | 47.14 | 51.3 |
| TraesCS7D01G491200.1 | Wheat | mitochondrion, plastid | 51.43 | 51.18 |
| TraesCS2B01G185200.1 | Wheat | cytosol | 49.52 | 51.11 |
| TraesCS4B01G286600.1 | Wheat | plastid | 52.62 | 51.04 |
| TraesCS4D01G285300.1 | Wheat | plastid | 52.62 | 51.04 |
| TraesCS2A01G159600.1 | Wheat | cytosol | 49.29 | 50.99 |
| TraesCS2D01G166800.1 | Wheat | cytosol | 49.29 | 50.99 |
| TraesCS7B01G411300.1 | Wheat | mitochondrion | 50.71 | 50.84 |
| TraesCS6B01G170200.1 | Wheat | plastid | 51.43 | 50.82 |
| TraesCS4A01G017400.1 | Wheat | plastid | 52.38 | 50.81 |
| Zm00001d031813_P001 | Maize | extracellular | 52.62 | 50.8 |
| TraesCS5D01G528100.1 | Wheat | cytosol | 47.38 | 50.77 |
| TraesCS7B01G411800.1 | Wheat | plastid | 51.67 | 50.7 |
| EES15134 | Sorghum | plastid | 52.38 | 50.57 |
| TraesCS5B01G529100.1 | Wheat | cytosol | 47.14 | 50.51 |
| HORVU5Hr1G119820.1 | Barley | plastid | 47.62 | 50.38 |
| TraesCS3B01G036100.1 | Wheat | cytosol | 32.62 | 50.37 |
| TraesCS3D01G033200.1 | Wheat | plastid | 51.9 | 50.35 |
| TraesCS3D01G033500.1 | Wheat | plastid | 51.9 | 50.35 |
| TraesCS1A01G407800.2 | Wheat | cytosol | 46.9 | 50.26 |
| TraesCS5B01G529000.1 | Wheat | cytosol | 47.38 | 50.13 |
| HORVU4Hr1G075070.7 | Barley | plastid | 51.9 | 50.11 |
| TraesCS3A01G046500.1 | Wheat | plastid | 51.43 | 49.88 |
| TraesCS7A01G504200.1 | Wheat | mitochondrion | 49.05 | 49.88 |
| TraesCS7A01G504700.1 | Wheat | plastid | 50.0 | 49.76 |
| TraesCS3B01G036800.1 | Wheat | plastid | 51.19 | 49.54 |
| Os08t0476900-01 | Rice | plastid | 50.71 | 49.53 |
| HORVU2Hr1G029000.2 | Barley | cytosol | 48.57 | 49.51 |
| TraesCS5D01G528000.1 | Wheat | cytosol, peroxisome, plastid | 47.14 | 49.5 |
| Solyc04g079220.1.1 | Tomato | cytosol | 8.81 | 49.33 |
| Zm00001d031815_P001 | Maize | cytosol | 50.71 | 48.52 |
| Zm00001d031814_P001 | Maize | cytosol, plasma membrane, plastid | 47.14 | 47.03 |
| TraesCS4A01G345300.1 | Wheat | cytosol | 44.76 | 46.77 |
| Solyc02g090660.1.1 | Tomato | cytosol, peroxisome, plastid | 30.71 | 46.74 |
| HORVU7Hr1G113080.1 | Barley | cytosol | 51.67 | 46.47 |
| TraesCS3D01G033600.1 | Wheat | mitochondrion, peroxisome | 33.1 | 46.03 |
| Os08t0376550-00 | Rice | cytosol | 19.52 | 45.3 |
| HORVU3Hr1G004220.4 | Barley | cytosol, plastid | 51.67 | 45.21 |
| HORVU6Hr1G027900.2 | Barley | cytosol | 36.9 | 45.19 |
| Solyc08g006850.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 40.48 | 45.09 |
| HORVU7Hr1G006840.3 | Barley | cytosol | 30.71 | 44.48 |
| Solyc08g006860.2.1 | Tomato | extracellular | 39.76 | 43.6 |
| OQU80643 | Sorghum | cytosol | 50.48 | 43.09 |
| TraesCS3B01G036500.1 | Wheat | plastid | 40.71 | 38.51 |
| OQU83677 | Sorghum | cytosol | 22.14 | 27.93 |
| Solyc05g056030.2.1 | Tomato | cytosol | 29.05 | 26.18 |
| Solyc10g080690.1.1 | Tomato | cytosol | 26.19 | 25.46 |
| Solyc09g065240.2.1 | Tomato | cytosol | 22.86 | 25.07 |
| Solyc10g078530.1.1 | Tomato | cytosol | 24.76 | 23.91 |
Protein Annotations
| Gene3D:3.40.1090.10 | MapMan:5.7.2.2.3 | InterPro:Acyl_Trfase/lysoPLipase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004620 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0016020 | GO:GO:0016042 | GO:GO:0016787 | GO:GO:0047372 |
| InterPro:IPR002641 | UniProt:K4B6U4 | PFAM:PF01734 | InterPro:PNPLA_dom | PFscan:PS51635 | PANTHER:PTHR32176 |
| PANTHER:PTHR32176:SF6 | SUPFAM:SSF52151 | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc02g065090.2 | EnsemblPlants:Solyc02g065090.2.1 | TMHMM:TMhelix |
| UniParc:UPI0002768A17 | SEG:seg | : | : | : | : |
Description
Patatin [Source:UniProtKB/TrEMBL;Acc:K4B6U4]
Coordinates
chr2:+:36259908..36262160
Molecular Weight (calculated)
45621.1 Da
IEP (calculated)
9.440
GRAVY (calculated)
-0.030
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRIFVAALT LLVTLQVLHI PIAFAATTGK KITILSIDGG GIRGIIPGTI LAFLESKLQE LDGPNARIAD YFDVVAGTST GGLIATMLTA PNKDNRPLYA
101: AKNITNFYMD HGPKIFPESS RTSFLKRLAN IFGGPKYDGK YLRTLVRSIL GNLTVTQTLT QLVIPSFDIK RLQAVVFTTS DAKAHVSKNA LLSDVCLSTS
201: AAPTYFPVHY FETRDSQGKT RTFDLVDGGV AANNPTLVAI TQTSKEMMLG KLQNAGLKPM DCKKMLVLSL GTGIAKDEKK YSAAAASTWG VLGWLYNNGA
301: SPLLDVYGDA SSDIVDVHLS TIFQSLDSQN NYLRIQDDSL SGEAASMDVA TKKNMEALVQ IGNDRLKKGV SRVNLDTGRY EEVSGEGTNE EALIRFAKLL
401: SEQRKIRQPV DEFISIRKIL
101: AKNITNFYMD HGPKIFPESS RTSFLKRLAN IFGGPKYDGK YLRTLVRSIL GNLTVTQTLT QLVIPSFDIK RLQAVVFTTS DAKAHVSKNA LLSDVCLSTS
201: AAPTYFPVHY FETRDSQGKT RTFDLVDGGV AANNPTLVAI TQTSKEMMLG KLQNAGLKPM DCKKMLVLSL GTGIAKDEKK YSAAAASTWG VLGWLYNNGA
301: SPLLDVYGDA SSDIVDVHLS TIFQSLDSQN NYLRIQDDSL SGEAASMDVA TKKNMEALVQ IGNDRLKKGV SRVNLDTGRY EEVSGEGTNE EALIRFAKLL
401: SEQRKIRQPV DEFISIRKIL
001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI
Arabidopsis Description
PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.