Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- cytosol 1
- vacuole 6
- extracellular 6
- endoplasmic reticulum 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400044055 | Potato | cytosol | 73.89 | 77.75 |
| Solyc08g006850.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 74.15 | 75.33 |
| Solyc04g079240.2.1 | Tomato | nucleus | 48.3 | 44.9 |
| Solyc02g090630.2.1 | Tomato | cytosol | 44.65 | 43.29 |
| Solyc04g079250.2.1 | Tomato | cytosol | 44.91 | 42.47 |
| GSMUA_Achr3P06850_001 | Banana | cytosol | 44.13 | 41.42 |
| Solyc04g079220.1.1 | Tomato | cytosol | 7.83 | 40.0 |
| Solyc04g079260.2.1 | Tomato | cytosol | 42.3 | 39.9 |
| Solyc02g065090.2.1 | Tomato | nucleus | 43.6 | 39.76 |
| Solyc03g044710.2.1 | Tomato | endoplasmic reticulum, golgi, vacuole | 42.56 | 39.76 |
| Solyc02g090490.2.1 | Tomato | extracellular | 42.04 | 39.08 |
| Solyc02g065100.1.1 | Tomato | endoplasmic reticulum, extracellular | 40.73 | 37.96 |
| KRH48827 | Soybean | cytosol, plastid | 23.5 | 37.82 |
| KRH48830 | Soybean | extracellular, vacuole | 39.95 | 36.6 |
| Solyc04g079210.2.1 | Tomato | cytosol | 15.14 | 35.8 |
| KRH48829 | Soybean | endoplasmic reticulum, extracellular | 37.86 | 35.63 |
| Solyc02g090660.1.1 | Tomato | cytosol, peroxisome, plastid | 24.8 | 34.42 |
| Solyc05g056030.2.1 | Tomato | cytosol | 24.8 | 20.39 |
| Solyc09g065240.2.1 | Tomato | cytosol | 19.84 | 19.84 |
| Solyc10g080690.1.1 | Tomato | cytosol | 21.41 | 18.98 |
| Solyc10g078530.1.1 | Tomato | cytosol | 20.37 | 17.93 |
Protein Annotations
| Gene3D:3.40.1090.10 | MapMan:5.7.2.2.3 | InterPro:Acyl_Trfase/lysoPLipase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004620 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0016020 | GO:GO:0016042 | GO:GO:0016787 | GO:GO:0047372 |
| InterPro:IPR002641 | UniProt:K4CIH4 | PFAM:PF01734 | InterPro:PNPLA_dom | PFscan:PS51635 | PANTHER:PTHR32176 |
| PANTHER:PTHR32176:SF13 | SUPFAM:SSF52151 | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc08g006860.2 | EnsemblPlants:Solyc08g006860.2.1 | TMHMM:TMhelix |
| UniParc:UPI000276C23F | SEG:seg | : | : | : | : |
Description
Patatin [Source:UniProtKB/TrEMBL;Acc:K4CIH4]
Coordinates
chr8:+:1402460..1406481
Molecular Weight (calculated)
41924.6 Da
IEP (calculated)
4.397
GRAVY (calculated)
-0.081
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTKSFLIL IFMILATTSS TFATEEMVTV LSIDGGAIRG IIPGVILRYL EAELQRIDNN TDARVADYFD LIGGTSTGGL VTAMLTTPNE NNRPFAAANE
101: IVPFYFEHGP KIFEPSGNPL FGPQYNGTYL MQVIQEKVGE TFLNQTLTEV VISSFDIQTN KPVIFTKSSL AKSPELNAKM YDICYSTAAA PTYFAPLGFN
201: TSHNGDQYRF NLVDGGVATV GDPALLSVSV ATKLAEEDPA FSSIRSLNFK RMLLLSLGTG TTSDFDKTYT AEQAATWGIL QWGSAIQAMT GAASSYMTDY
301: YLSTVFQALD SQDNYLRVQD NALTGTTTAW DDASMANMLL LEQVGENLLK KQVSNDETYE QALTRFAEKL SAQKKLRENK ASY
101: IVPFYFEHGP KIFEPSGNPL FGPQYNGTYL MQVIQEKVGE TFLNQTLTEV VISSFDIQTN KPVIFTKSSL AKSPELNAKM YDICYSTAAA PTYFAPLGFN
201: TSHNGDQYRF NLVDGGVATV GDPALLSVSV ATKLAEEDPA FSSIRSLNFK RMLLLSLGTG TTSDFDKTYT AEQAATWGIL QWGSAIQAMT GAASSYMTDY
301: YLSTVFQALD SQDNYLRVQD NALTGTTTAW DDASMANMLL LEQVGENLLK KQVSNDETYE QALTRFAEKL SAQKKLRENK ASY
001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI
Arabidopsis Description
PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.