Factsheet for PGSC0003DMT400044055

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
vacuole 4
extracellular 2
endoplasmic reticulum 2
plasma membrane 3
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane, vacuole
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022567	Potato	extracellular	71.43	74.71
Solyc08g006860.2.1	Tomato	extracellular	77.75	73.89
PGSC0003DMT400036586	Potato	cytosol	46.7	73.28
PGSC0003DMT400044046	Potato	cytosol	54.67	72.36
PGSC0003DMT400044057	Potato	cytosol	15.38	58.33
PGSC0003DMT400040781	Potato	cytosol	46.15	42.11
GSMUA_Achr3P06850_001	Banana	cytosol	45.6	40.69
PGSC0003DMT400025955	Potato	extracellular	45.05	39.81
PGSC0003DMT400002019	Potato	golgi, vacuole	44.51	38.57
PGSC0003DMT400058995	Potato	cytosol	16.76	38.12
KRH48830	Soybean	extracellular, vacuole	42.86	37.32
KRH48827	Soybean	cytosol, plastid	23.9	36.55
PGSC0003DMT400002016	Potato	cytosol	25.82	36.43
KRH48829	Soybean	endoplasmic reticulum, extracellular	39.84	35.63
PGSC0003DMT400040802	Potato	mitochondrion	14.01	34.0
PGSC0003DMT400051868	Potato	cytosol	21.15	20.16
PGSC0003DMT400033524	Potato	cytosol	20.88	20.05
PGSC0003DMT400060317	Potato	cytosol	23.9	18.67
PGSC0003DMT400060932	Potato	cytosol	21.7	18.41
PGSC0003DMT400021555	Potato	cytosol	21.43	17.93

Protein Annotations

Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	ProteinID:ABC58847	ProteinID:ABC58847.1	InterPro:Acyl_Trfase/lysoPLipase	EMBL:DQ274260
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0006629	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0016042	GO:GO:0016787	GO:GO:0045735	InterPro:IPR002641	UniProt:M1BFJ1
PFAM:PF01734	EnsemblPlantsGene:PGSC0003DMG400017091	PGSC:PGSC0003DMG400017091	EnsemblPlants:PGSC0003DMT400044055	InterPro:PNPLA_dom	PFscan:PS51635
PANTHER:PTHR32176	PANTHER:PTHR32176:SF13	SUPFAM:SSF52151	UniParc:UPI00029621AD	SEG:seg	:

Description

Patatin-01 [Source:PGSC_GENE;Acc:PGSC0003DMG400017091]

Coordinates

chr8:-:1596887..1601249

Molecular Weight (calculated)

39786.2 Da

IEP (calculated)

4.750

GRAVY (calculated)

-0.153

Length

364 amino acids

Sequence
(BLAST)

001: MVTVLSIDGG AIRGIIPGVI LEFLEGELQR IDNNPDARLA DYFDVIGGTS TGGLLAAMIT TPNENNRPFA AANEIVPFYF EHGPSIFSPR PLFPIIPGPK
101: YNSTYLMQVI KEKMGETRLN EALTEVVLST FDIKTNKPVI FTKSSLAESP ELNAKMYDIC YSTAAAPTYF APHYFATTTS NGDPYEFNLV DGGVATVGSP
201: ALLSVSVAMK HAENEDPAFA SIKSMNYKKM LLLSLGTGTT SDFHETYTAA EAARWGPLIW MSVIQNMTDA GSTYMTDYYL STAFKALGSQ DNYLRVQENA
301: LTGSTTTWDN ATLANMQLLK QVGENLLNKQ VSKDNPDETY ADALIGFATK LSDRKKLRAN KASY

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.