Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400036586 | Potato | cytosol | 60.42 | 25.0 |
| PGSC0003DMT400044046 | Potato | cytosol | 66.67 | 23.27 |
| KRH48827 | Soybean | cytosol, plastid | 48.96 | 19.75 |
| PGSC0003DMT400022567 | Potato | extracellular | 66.67 | 18.39 |
| PGSC0003DMT400040802 | Potato | mitochondrion | 27.08 | 17.33 |
| PGSC0003DMT400044055 | Potato | cytosol | 58.33 | 15.38 |
| PGSC0003DMT400002016 | Potato | cytosol | 40.62 | 15.12 |
| PGSC0003DMT400040781 | Potato | cytosol | 57.29 | 13.78 |
| GSMUA_Achr3P06850_001 | Banana | cytosol | 58.33 | 13.73 |
| KRH48830 | Soybean | extracellular, vacuole | 54.17 | 12.44 |
| KRH48829 | Soybean | endoplasmic reticulum, extracellular | 48.96 | 11.55 |
| PGSC0003DMT400025955 | Potato | extracellular | 48.96 | 11.41 |
| PGSC0003DMT400002019 | Potato | golgi, vacuole | 44.79 | 10.24 |
| PGSC0003DMT400033524 | Potato | cytosol | 28.12 | 7.12 |
| PGSC0003DMT400051868 | Potato | cytosol | 28.12 | 7.07 |
| PGSC0003DMT400060932 | Potato | cytosol | 26.04 | 5.83 |
| PGSC0003DMT400060317 | Potato | cytosol | 28.12 | 5.79 |
| PGSC0003DMT400021555 | Potato | cytosol | 26.04 | 5.75 |
| PGSC0003DMT400058995 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400044057 | EnsemblPlantsGene:PGSC0003DMG400017092 | Gene3D:3.40.1090.10 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 |
| InterPro:Acyl_Trfase/lysoPLipase | InterPro:IPR002641 | InterPro:PNPLA_dom | ncoils:Coil | PANTHER:PTHR32176 | PANTHER:PTHR32176:SF24 |
| PFscan:PS51635 | PGSC:PGSC0003DMG400017092 | SUPFAM:SSF52151 | UniParc:UPI0002968D4F | UniProt:M1BFJ2 | MapMan:35.1 |
Description
Patatin homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400017092]
Coordinates
chr8:-:1552046..1552607
Molecular Weight (calculated)
10720.0 Da
IEP (calculated)
8.497
GRAVY (calculated)
-0.199
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MMEKNLHKVL QDKLGETRLH QALTNVVIPT FDIKKNQPII FTKSKLDAKM CDICYSTAAA PTCFPPHYFV TNDAKGNQVE FNLIDGSVVA ANPVRN
001: MENKSPSKKN KPPSCGSLVT ILSLDGGGVR GIIAGVILAF LEKQLQELDG EEARLADYFD VIAGTSTGGL VTAMLTVPDE TGRPHFAAKD IVPFYLEHCP
101: KIFPQPTGVL ALLPKLPKLL SGPKYSGKYL RNLLSKLLGE TRLHQTLTNI VIPTFDIKKL QPTIFSSYQL LVDPSLDVKV SDICIGTSAA PTFFPPHYFS
201: NEDSQGNKTE FNLVDGAVTA NNPTLVAMTA VSKQIVKNNP DMGKLKPLGF DRFLVISIGT GSTKREEKYS AKKAAKWGII SWLYDDGSTP ILDITMESSR
301: DMIHYHSSVV FKALQSEDKY LRIDDDTLEG DVSTMDLATK SNLENLQKIG EKMLTNRVMQ MNIDTGVYEP VAENITNDEQ LKR
101: KIFPQPTGVL ALLPKLPKLL SGPKYSGKYL RNLLSKLLGE TRLHQTLTNI VIPTFDIKKL QPTIFSSYQL LVDPSLDVKV SDICIGTSAA PTFFPPHYFS
201: NEDSQGNKTE FNLVDGAVTA NNPTLVAMTA VSKQIVKNNP DMGKLKPLGF DRFLVISIGT GSTKREEKYS AKKAAKWGII SWLYDDGSTP ILDITMESSR
301: DMIHYHSSVV FKALQSEDKY LRIDDDTLEG DVSTMDLATK SNLENLQKIG EKMLTNRVMQ MNIDTGVYEP VAENITNDEQ LKR
Arabidopsis Description
PLP1Patatin [Source:UniProtKB/TrEMBL;Acc:A0A178UVZ8]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.