Factsheet for PGSC0003DMT400002016

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
mitochondrion 2
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058995	Potato	cytosol	42.25	68.12
Solyc02g065100.1.1	Tomato	endoplasmic reticulum, extracellular	94.19	59.12
VIT_00s0567g00040.t01	Wine grape	cytosol	36.43	58.02
PGSC0003DMT400025955	Potato	extracellular	71.71	44.9
VIT_00s0567g00060.t01	Wine grape	cytosol	63.95	44.12
TraesCS3D01G033600.1	Wheat	mitochondrion, peroxisome	51.55	44.04
Os08t0376550-00	Rice	cytosol	28.68	40.88
TraesCS3B01G036100.1	Wheat	cytosol	43.02	40.81
PGSC0003DMT400002019	Potato	golgi, vacuole	66.28	40.71
PGSC0003DMT400044057	Potato	cytosol	15.12	40.62
TraesCS6A01G142200.1	Wheat	cytosol	51.16	40.12
HORVU6Hr1G027900.2	Barley	cytosol	51.55	38.78
PGSC0003DMT400036586	Potato	cytosol	34.11	37.93
PGSC0003DMT400040802	Potato	mitochondrion	20.93	36.0
TraesCS7A01G504400.1	Wheat	cytoskeleton, cytosol, peroxisome	53.88	34.41
TraesCS4A01G449600.1	Wheat	mitochondrion	55.81	33.96
TraesCS7A01G038300.1	Wheat	mitochondrion	55.81	33.96
TraesCS4A01G450400.1	Wheat	mitochondrion	55.81	33.96
TraesCS7D01G491900.1	Wheat	plastid	55.04	33.65
TraesCS7B01G411200.1	Wheat	plastid	54.65	33.41
Os08t0477100-01	Rice	plastid	55.43	33.18
TraesCS7A01G504100.1	Wheat	plastid	54.26	33.18
TraesCS7D01G034300.1	Wheat	mitochondrion	53.1	33.17
TraesCS7D01G491200.1	Wheat	mitochondrion, plastid	53.88	32.94
TraesCS7B01G411800.1	Wheat	plastid	54.26	32.71
TraesCS7A01G504700.1	Wheat	plastid	53.49	32.7
TraesCS7A01G504200.1	Wheat	mitochondrion	52.33	32.69
TraesCS3D01G033200.1	Wheat	plastid	54.65	32.56
TraesCS3D01G033500.1	Wheat	plastid	54.65	32.56
TraesCS3B01G036800.1	Wheat	plastid	54.26	32.26
TraesCS7B01G411300.1	Wheat	mitochondrion	52.33	32.22
TraesCS3A01G046500.1	Wheat	plastid	53.88	32.1
TraesCS4B01G286600.1	Wheat	plastid	53.88	32.1
TraesCS4A01G017400.1	Wheat	plastid	53.49	31.87
TraesCS4D01G285300.1	Wheat	plastid	53.49	31.87
KXG25325	Sorghum	plastid	53.88	31.81
Os08t0476900-01	Rice	plastid	52.33	31.4
HORVU4Hr1G075070.7	Barley	plastid	52.71	31.26
Zm00001d031811_P001	Maize	plastid	52.71	31.19
TraesCS2D01G166800.1	Wheat	cytosol	48.84	31.03
EES15134	Sorghum	plastid	52.33	31.03
TraesCS2B01G185200.1	Wheat	cytosol	48.84	30.96
OQU80645	Sorghum	cytosol	48.06	30.92
TraesCS6B01G170200.1	Wheat	plastid	50.78	30.82
TraesCS3B01G036500.1	Wheat	plastid	52.71	30.63
PGSC0003DMT400040781	Potato	cytosol	47.29	30.58
TraesCS2A01G159600.1	Wheat	cytosol	47.67	30.3
HORVU7Hr1G113080.1	Barley	cytosol	54.26	29.98
TraesCS5B01G529000.1	Wheat	cytosol	46.12	29.97
HORVU2Hr1G029000.2	Barley	cytosol	47.67	29.85
HORVU5Hr1G119810.5	Barley	cytosol	44.57	29.79
Zm00001d031813_P001	Maize	extracellular	50.0	29.66
HORVU7Hr1G006840.3	Barley	cytosol	33.33	29.66
TraesCS1A01G407800.2	Wheat	cytosol	44.96	29.59
TraesCS5D01G528000.1	Wheat	cytosol, peroxisome, plastid	45.74	29.5
PGSC0003DMT400044046	Potato	cytosol	31.4	29.45
HORVU5Hr1G119820.1	Barley	plastid	44.96	29.22
HORVU3Hr1G004220.4	Barley	cytosol, plastid	54.26	29.17
TraesCS5B01G529100.1	Wheat	cytosol	44.19	29.08
TraesCS5D01G528100.1	Wheat	cytosol	44.19	29.08
TraesCS4A01G345300.1	Wheat	cytosol	44.19	28.36
Zm00001d031815_P001	Maize	cytosol	48.06	28.25
TraesCS4A01G345400.1	Wheat	cytosol	22.48	27.1
PGSC0003DMT400022567	Potato	extracellular	35.66	26.44
OQU83677	Sorghum	cytosol	33.72	26.13
PGSC0003DMT400044055	Potato	cytosol	36.43	25.82
Zm00001d031814_P001	Maize	cytosol, plasma membrane, plastid	41.86	25.65
VIT_00s0567g00050.t01	Wine grape	cytosol	20.93	25.35
OQU80643	Sorghum	cytosol	48.06	25.2
Os08t0477500-01	Rice	plasma membrane	23.26	22.3
TraesCS1A01G407900.1	Wheat	cytosol	20.54	22.27
HORVU7Hr1G113030.2	Barley	plastid	22.09	21.84
TraesCS7D01G491300.1	Wheat	plastid	21.71	21.79
HORVU2Hr1G037280.1	Barley	cytosol	21.32	21.32
Os08t0376500-00	Rice	plastid	20.16	20.0
KRH61261	Soybean	cytosol, peroxisome, plastid	15.12	17.33
PGSC0003DMT400060317	Potato	cytosol	29.46	16.31
PGSC0003DMT400051868	Potato	cytosol	22.48	15.18
PGSC0003DMT400060932	Potato	cytosol	24.81	14.92
PGSC0003DMT400033524	Potato	cytosol	21.32	14.51
PGSC0003DMT400021555	Potato	cytosol	24.42	14.48

Protein Annotations

Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	InterPro:Acyl_Trfase/lysoPLipase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006629	GO:GO:0006950
GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016042	GO:GO:0016787
GO:GO:0045735	InterPro:IPR002641	UniProt:M0ZJH5	PFAM:PF01734	EnsemblPlantsGene:PGSC0003DMG400000765	PGSC:PGSC0003DMG400000765
EnsemblPlants:PGSC0003DMT400002016	InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32176	PANTHER:PTHR32176:SF15	SUPFAM:SSF52151
UniParc:UPI000296355D	:	:	:	:	:

Description

Patatin 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400000765]

Coordinates

chr2:+:23709715..23713122

Molecular Weight (calculated)

28742.6 Da

IEP (calculated)

9.701

GRAVY (calculated)

-0.322

Length

258 amino acids

Sequence
(BLAST)

001: MKQTLTHTLI PTFDIKRLQP IIFTTTDARA SESKNARLSD VSLGTSAAPT YFPVHYFETK DGQGKIRTFD LVDGGVAANN PTLLAITHIS REIMTRRLKY
101: EDMKTVDCKK MLVLSLGAGT GKNKEKYNAA TASKWGLVSW MYNHGATPLL DIFTDAITDI VDIHVSTMFQ SLHNQKNYLR IQNDSMIGEA ASVDISTIEN
201: MQTLVQTGKD LLKKPVSRVN LETGRVEAVR GEGTNEEALT RFAKLLSEER KFRRLGTA

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.