Factsheet for PGSC0003DMT400036586

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044057	Potato	cytosol	25.0	60.42
PGSC0003DMT400044046	Potato	cytosol	68.97	58.18
PGSC0003DMT400022567	Potato	extracellular	84.91	56.61
Solyc08g006850.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	77.16	47.48
PGSC0003DMT400044055	Potato	cytosol	73.28	46.7
PGSC0003DMT400002016	Potato	cytosol	37.93	34.11
PGSC0003DMT400058995	Potato	cytosol	23.28	33.75
PGSC0003DMT400040802	Potato	mitochondrion	20.69	32.0
KRH48827	Soybean	cytosol, plastid	27.59	26.89
PGSC0003DMT400040781	Potato	cytosol	41.81	24.31
GSMUA_Achr3P06850_001	Banana	cytosol	42.24	24.02
PGSC0003DMT400002019	Potato	golgi, vacuole	40.52	22.38
PGSC0003DMT400025955	Potato	extracellular	39.66	22.33
KRH48830	Soybean	extracellular, vacuole	36.64	20.33
KRH48829	Soybean	endoplasmic reticulum, extracellular	34.05	19.41
PGSC0003DMT400060317	Potato	cytosol	22.41	11.16
PGSC0003DMT400051868	Potato	cytosol	18.1	10.99
PGSC0003DMT400033524	Potato	cytosol	17.24	10.55
PGSC0003DMT400060932	Potato	cytosol	18.53	10.02
PGSC0003DMT400021555	Potato	cytosol	18.53	9.89

Protein Annotations

Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	InterPro:Acyl_Trfase/lysoPLipase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006629	GO:GO:0006950
GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016042	GO:GO:0016787
GO:GO:0045735	InterPro:IPR002641	UniProt:M1B3W0	EnsemblPlantsGene:PGSC0003DMG400014104	PGSC:PGSC0003DMG400014104	EnsemblPlants:PGSC0003DMT400036586
InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32176	PANTHER:PTHR32176:SF13	SUPFAM:SSF52151	UniParc:UPI000295A56C

Description

Patatin-2-Kuras 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400014104]

Coordinates

chr8:-:1473270..1474875

Molecular Weight (calculated)

25643.3 Da

IEP (calculated)

4.650

GRAVY (calculated)

-0.234

Length

232 amino acids

Sequence
(BLAST)

001: MQVLQEKLGE TRVHQALTEV AISSFDIKTN KPVIFTKSNL ANAPELDAKM YDICYSTAAA PIYFPPHYFT THTSNGDIYE FNLVDGGVAT VGDPALLSLS
101: VATKLAQVDP KFASIKSLDY KQMLLLSLGT GTNSEFDKTY TAEEAAKWGP LRWMLAIQQM TNAASSYMTD YYISTVFQAR HSQNNYLRVQ ENALTGTTTE
201: MDDASEANMD LLVQVGETLL KKPVSKDSPE NL

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.