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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 4
  • vacuole 3
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, secretory
BaCelLo:cytosol
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 extracellular: 22902798
extracellular: 28248230
msms PMID: 28248230 doi
E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty
National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.
msms PMID: 22902798 doi
MB Fernández, MR Pagano, GR Daleo, MG Guevara
Instituto de Investigaciones Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, CC 1245, 7600 Mar del Plata, Argentina. Electronic address: mbfernan@mdp.edu.ar.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400036586 Potato cytosol 56.61 84.91
PGSC0003DMT400044046 Potato cytosol 63.79 80.73
Solyc08g006850.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 78.74 72.68
PGSC0003DMT400044055 Potato cytosol 74.71 71.43
PGSC0003DMT400044057 Potato cytosol 18.39 66.67
PGSC0003DMT400040781 Potato cytosol 47.41 41.35
GSMUA_Achr3P06850_001 Banana cytosol 48.28 41.18
PGSC0003DMT400002019 Potato golgi, vacuole 46.26 38.33
KRH48827 Soybean cytosol, plastid 26.15 38.24
PGSC0003DMT400025955 Potato extracellular 45.11 38.11
PGSC0003DMT400040802 Potato mitochondrion 15.8 36.67
KRH48830 Soybean extracellular, vacuole 43.68 36.36
PGSC0003DMT400058995 Potato cytosol 16.67 36.25
PGSC0003DMT400002016 Potato cytosol 26.44 35.66
KRH48829 Soybean endoplasmic reticulum, extracellular 40.52 34.64
PGSC0003DMT400051868 Potato cytosol 22.99 20.94
PGSC0003DMT400033524 Potato cytosol 22.41 20.58
PGSC0003DMT400060317 Potato cytosol 25.86 19.31
PGSC0003DMT400021555 Potato cytosol 21.55 17.24
PGSC0003DMT400060932 Potato cytosol 20.69 16.78
Protein Annotations
Gene3D:3.40.1090.10MapMan:5.7.2.2.3ProteinID:AAK19055ProteinID:AAK19055.1ProteinID:AAZ75956ProteinID:AAZ75956.1
ProteinID:AAZ75957ProteinID:AAZ75957.1ProteinID:ABC55678ProteinID:ABC55678.1ProteinID:ABC55679ProteinID:ABC55679.1
ProteinID:ABC55680ProteinID:ABC55680.1ProteinID:ABC55681ProteinID:ABC55681.1ProteinID:ABC55688ProteinID:ABC55688.1
ProteinID:ABC55689ProteinID:ABC55689.1ProteinID:ABC55690ProteinID:ABC55690.1ProteinID:ABC55692ProteinID:ABC55692.1
ProteinID:ABC55694ProteinID:ABC55694.1ProteinID:ABC55695ProteinID:ABC55695.1ProteinID:ABC55700ProteinID:ABC55700.1
ProteinID:ABC58769ProteinID:ABC58769.1EMBL:AF151219InterPro:Acyl_Trfase/lysoPLipaseProteinID:CAA81735ProteinID:CAA81735.1
EMBL:DQ114415EMBL:DQ114416EMBL:DQ274179EMBL:DQ274478EMBL:DQ274479EMBL:DQ274480
EMBL:DQ274481EMBL:DQ274488EMBL:DQ274489EMBL:DQ274490EMBL:DQ274492EMBL:DQ274494
EMBL:DQ274495EMBL:DQ274500GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0006629GO:GO:0006950GO:GO:0006952
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0016042GO:GO:0016787GO:GO:0045735
InterPro:IPR002641UniProt:M1AGX5PFAM:PF01734EnsemblPlantsGene:PGSC0003DMG400008749PGSC:PGSC0003DMG400008749EnsemblPlants:PGSC0003DMT400022567
InterPro:PNPLA_domPFscan:PS51635PANTHER:PTHR32176PANTHER:PTHR32176:SF13SUPFAM:SSF52151UniParc:UPI0002958AD5
EMBL:Z27221SEG:seg::::
Description
Patatin-05 [Source:PGSC_GENE;Acc:PGSC0003DMG400008749]
Coordinates
chr8:-:1435831..1439140
Molecular Weight (calculated)
38236.2 Da
IEP (calculated)
4.846
GRAVY (calculated)
-0.266
Length
348 amino acids
Sequence
(BLAST)
001: MVTVLSIDGG GIKGIIPGII LEFLEGQLQK MDNNADARLA DYFDVIGGTS TGGLLTAMIT TPNENNRPFA AAKDIVPFYF QHGPHIFNSS TGQFFGPKYD
101: GKYLMQVLQE KLGETRVHQA LTEVAISSFD IKTNKPVIFT KSNLAKSPEL DAKMSDICYS TAAAPTYFPP HYFATNTSNG DKYEFNLVDG AVATVADPAL
201: LSVSVATRRA EEDPAFASIR SLNYKQLLLL SLGTGTNSEF DKTHTAQETA KWGALQWMLV IQQMTEAASS YMTDYYLSTV FQDLHSQNNY LRVQENALTG
301: TTTKADDASE ANMELLVQVG ENLLKKPVSK DNPETYEEAL KRINRGYG
Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)
001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI
Arabidopsis Description
PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.