Factsheet for PGSC0003DMT400044046

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
vacuole 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036586	Potato	cytosol	58.18	68.97
PGSC0003DMT400044057	Potato	cytosol	23.27	66.67
PGSC0003DMT400022567	Potato	extracellular	80.73	63.79
PGSC0003DMT400044055	Potato	cytosol	72.36	54.67
PGSC0003DMT400040802	Potato	mitochondrion	20.0	36.67
KRH48827	Soybean	cytosol, plastid	30.91	35.71
GSMUA_Achr3P06850_001	Banana	cytosol	49.45	33.33
PGSC0003DMT400040781	Potato	cytosol	47.64	32.83
PGSC0003DMT400002016	Potato	cytosol	29.45	31.4
PGSC0003DMT400002019	Potato	golgi, vacuole	45.82	30.0
PGSC0003DMT400025955	Potato	extracellular	44.73	29.85
KRH48830	Soybean	extracellular, vacuole	41.82	27.51
KRH48829	Soybean	endoplasmic reticulum, extracellular	37.09	25.06
PGSC0003DMT400058995	Potato	cytosol	14.18	24.38
PGSC0003DMT400051868	Potato	cytosol	22.55	16.23
PGSC0003DMT400033524	Potato	cytosol	21.45	15.57
PGSC0003DMT400060317	Potato	cytosol	25.82	15.24
PGSC0003DMT400021555	Potato	cytosol	23.27	14.71
PGSC0003DMT400060932	Potato	cytosol	22.55	14.45

Protein Annotations

Gene3D:3.40.1090.10	MapMan:35.1	InterPro:Acyl_Trfase/lysoPLipase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006629	GO:GO:0006950
GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016042	GO:GO:0016787
GO:GO:0045735	InterPro:IPR002641	UniProt:M1BFI9	PFAM:PF01734	EnsemblPlantsGene:PGSC0003DMG401017090	PGSC:PGSC0003DMG401017090
EnsemblPlants:PGSC0003DMT400044046	InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32176	PANTHER:PTHR32176:SF13	SUPFAM:SSF52151
UniParc:UPI0002955B1F	SEG:seg	:	:	:	:

Description

Patatin-3-Kuras 1 [Source:PGSC_GENE;Acc:PGSC0003DMG401017090]

Coordinates

chr8:-:1630919..1632811

Molecular Weight (calculated)

30203.8 Da

IEP (calculated)

5.568

GRAVY (calculated)

-0.133

Length

275 amino acids

Sequence
(BLAST)

001: DARLADYFDV IGGTSTGGLL AAMITTPNET NRPFAAAKDI APFYFEHGPK IFQSSGQNSG PIYDGKYLMH VLQEKFGETR LHQALTEVAI STFDIKTNKP
101: VIFTKSQLAK SPELDAKMYD ISYSTAAAPV YFPPHYFVTN TSNGDKYEFN LVDGGVAAGN PSLLSISVAT KLAEEDPAFA SIKSLNYKQM LLLSLGTGTT
201: SEFDKSHTAE EAAKWGILQW MLPLQEMTSA ASSYMNDYYL STVFQALDSQ NNYLRVQVSP NLIIIIIIGN LHKSH

Best Arabidopsis Sequence Match ( AT4G37060.1 )
(BLAST)

001: MENESPSKKN MPPSCGTLVT ILSLDGGGVR GIIAGVILAY LEKQLQELDG EHVRVADYFD VIAGTSTGGL VTAMLTAPDE NGRPRFAAKE IVPFYLEHCP
101: KIFPQPTGVL ALLPKLPKLL SGPKYSGNYL RTTLGKLLGE TKLRQTLTNV VIPTFDIKTL QPTIFSSYQA LTDPSLDVKV SDICIGTSAA PTYFPPYYFS
201: NEDSQGKTRH FNLVDGGVTA NNPTLVAMTA VTKQIVNNNP DMGTLNPLGY DQFLVISIGT GSAKKEERYS AKKAAKWGII SWLYEDGTTP ILDITFESSR
301: DIVHYHSSVV FKALQSEDKY LRIDDDTLEG DASTLDLSTK SNLENLIKLG EKMLTNRVMQ MNIDTGTYEP AAENINNDEQ LKRFAKILSE ERKLRRKRSD
401: KMTKDSSIGS QEIK

Arabidopsis Description

PLP5PATATIN-like protein 5 [Source:TAIR;Acc:AT4G37060]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.