Factsheet for PGSC0003DMT400060317

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
vacuole 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g056030.2.1	Tomato	cytosol	98.28	98.28
VIT_13s0019g04200.t01	Wine grape	cytosol	77.47	78.82
KRH34879	Soybean	cytosol	72.53	73.0
CDX74862	Canola	cytosol	62.88	65.26
CDY07662	Canola	cytosol	65.45	64.08
CDY24974	Canola	cytosol	65.24	63.87
Bra000125.1-P	Field mustard	cytosol	65.88	63.56
GSMUA_Achr5P03830_001	Banana	cytosol	58.8	63.13
CDX67618	Canola	mitochondrion	63.09	63.09
CDY07512	Canola	mitochondrion	63.52	62.32
AT3G54950.1	Thale cress	mitochondrion	65.24	62.3
Bra003202.1-P	Field mustard	mitochondrion	63.52	62.18
AT2G39220.1	Thale cress	cytosol	66.31	61.92
CDX73423	Canola	mitochondrion	65.24	61.91
CDY44633	Canola	cytosol	64.38	61.73
CDY56960	Canola	mitochondrion	64.38	61.73
GSMUA_Achr2P12330_001	Banana	cytosol	52.58	61.25
KRG91895	Soybean	cytosol, extracellular, mitochondrion, plastid	71.46	61.21
GSMUA_Achr8P18860_001	Banana	cytosol	43.56	61.14
Bra005058.1-P	Field mustard	cytosol	63.73	60.99
Bra007119.1-P	Field mustard	mitochondrion	64.59	60.69
GSMUA_Achr5P18500_001	Banana	cytosol	49.57	59.54
GSMUA_Achr11P...	Banana	mitochondrion	36.48	59.03
CDY43526	Canola	nucleus	60.73	57.99
CDX68587	Canola	nucleus	61.37	57.31
AT4G29800.2	Thale cress	cytosol	62.02	54.94
EER95163	Sorghum	cytosol	53.43	54.13
Zm00001d028482_P001	Maize	cytosol	52.79	53.48
TraesCS4D01G221300.1	Wheat	cytosol	52.36	53.16
TraesCS4B01G221000.1	Wheat	cytosol	52.36	53.04
TraesCS4A01G083200.1	Wheat	cytosol	52.36	52.81
Os03t0254400-01	Rice	cytosol	53.0	52.67
PGSC0003DMT400021555	Potato	cytosol	43.99	47.13
PGSC0003DMT400060932	Potato	cytosol	43.35	47.09
PGSC0003DMT400033524	Potato	cytosol	36.05	44.33
HORVU0Hr1G008670.3	Barley	cytosol	37.98	43.81
PGSC0003DMT400051868	Potato	cytosol	35.62	43.46
PGSC0003DMT400025955	Potato	extracellular	27.9	31.55
PGSC0003DMT400002016	Potato	cytosol	16.31	29.46
PGSC0003DMT400002019	Potato	golgi, vacuole	26.18	29.05
PGSC0003DMT400040781	Potato	cytosol	24.68	28.82
PGSC0003DMT400044057	Potato	cytosol	5.79	28.12
PGSC0003DMT400022567	Potato	extracellular	19.31	25.86
PGSC0003DMT400044046	Potato	cytosol	15.24	25.82
PGSC0003DMT400058995	Potato	cytosol	8.58	25.0
PGSC0003DMT400040802	Potato	mitochondrion	7.73	24.0
PGSC0003DMT400044055	Potato	cytosol	18.67	23.9
PGSC0003DMT400036586	Potato	cytosol	11.16	22.41

Protein Annotations

EntrezGene:102587900	Gene3D:3.40.1090.10	MapMan:5.7.2.2.4	InterPro:Acyl_Trfase/lysoPLipase	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016042	GO:GO:0016787
InterPro:IPR002641	UniProt:M1C5L4	PFAM:PF01734	EnsemblPlantsGene:PGSC0003DMG400023463	PGSC:PGSC0003DMG400023463	EnsemblPlants:PGSC0003DMT400060317
InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32241	PANTHER:PTHR32241:SF3	SUPFAM:SSF52151	UniParc:UPI000296EF00
RefSeq:XP_006345802.1	RefSeq:XP_015163540.1	:	:	:	:

Description

Patatin T5 [Source:PGSC_GENE;Acc:PGSC0003DMG400023463]

Coordinates

chr5:+:51537055..51541843

Molecular Weight (calculated)

51333.3 Da

IEP (calculated)

7.988

GRAVY (calculated)

-0.320

Length

466 amino acids

Sequence
(BLAST)

001: MESNVISDMR LEPSIDTDKL SYEIFSILES KFLFGYDDQK LWVPKNLPSP VEDNKNDGVL TTSATENIQA IKNQRGKICI LSIDGGGMRN ILSGKALAYL
101: EQALKVKSGN PEARIADYFD VAVGSGVGGI FTAMLFSTKD QNRPVFQAED TWKLLEEQGR RIYPSKGSSS AGNGFLRRVF RGGATRSDTS GLEKVMKEAF
201: MDKKTGRSLT LKDTLKPVLI PCYDLSSTAP FLFSRADAFE SESFDFRLWE VCRATSAEPG LFEPVCMKSV DGKTGCVAVD GGLAMSNPTA AAITHVLHNK
301: QEFPFVRGVE DILVLSLGTG QLLEGSFQYE HVKKWKAKDW AKPMARISGD GAADMVDHSV AMAFGQCRSS NYVRIQANGS SFGRCGVNID ADPSPNNVKK
401: LVGIADEMLK QKNVESLLFG GRKIAEQSNF QKLDWFAGEL VQEHQRRSCR IAPTVAFKQH LTNQEK

Best Arabidopsis Sequence Match ( AT2G39220.1 )
(BLAST)

001: MLTTMQRVHN KPIDSIGGFK HLVKQSNGGD GGVTATDMQE PSIETDKLSY EIFSILESKF LFGYDDDLKL MESRSRDPSP EQETASPAMV EALNGVVPGT
101: VKNQRGKVCV LSIDSGGMRG IIPGKALAYL EHALKSKSGD PNARIADYFD VASGSGIGGI FTAMLFASSD GNRPIFKAED TWRFLAMKGK SFYNKSPPGI
201: LNRVMKTGSG GSGGSGSKLE KAMKESFEEL TLKDTLKPVL IPCYDLTSSA PFLFSRADAL ETDGYDFKLW EVCRATWAEP GVFEPVEMRS VDGKTRCVAV
301: DGGLAMSNPT AAAITHVLHN KQEFPFVRGV EDLLVLSLGT GQLVDVKYDC DKVMKWKAKH WARPAVRISA DGAADTVDQA VSMAFGQCRR SNYVRIQANG
401: SSFGPCKPNI DTDASPSNVN MLVGVAEEML KQKNAESVLF GGKKINEESN YEKLDWLAGE LVLEHQRRSC RIAPTVAFKQ SGDRRVDQQT IFKDIDCMF

Arabidopsis Description

PLP6Patatin-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O80959]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.