Factsheet for PGSC0003DMT400033524

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, vacuole
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid, vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006495
PGSC0003DMT400060460
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63200.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT3G63200.1	PGSC0003DMT400060460	AT2G39450.1	21798944
AT3G63200.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT3G63200.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT3G63200.1	PGSC0003DMT400073246	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065240.2.1	Tomato	cytosol	98.15	97.13
PGSC0003DMT400051868	Potato	cytosol	79.42	78.8
VIT_07s0151g01130.t01	Wine grape	cytosol	74.67	73.51
AT3G63200.1	Thale cress	cytosol	71.24	70.31
CDY56455	Canola	cytosol	67.02	69.4
KRH32021	Soybean	cytosol	69.39	69.21
KRH71425	Soybean	cytosol	69.13	69.13
Bra040428.1-P	Field mustard	cytosol	69.39	67.96
CDX89181	Canola	cytosol	69.39	67.96
CDX93922	Canola	cytosol	69.13	67.7
Bra007735.1-P	Field mustard	cytosol	68.6	67.53
CDX76689	Canola	cytosol	68.6	67.53
KRG95536	Soybean	cytosol	65.44	64.92
KRH67210	Soybean	cytosol	65.7	62.25
PGSC0003DMT400060932	Potato	cytosol	41.16	36.36
PGSC0003DMT400060317	Potato	cytosol	44.33	36.05
PGSC0003DMT400021555	Potato	cytosol	40.9	35.63
PGSC0003DMT400044057	Potato	cytosol	7.12	28.12
PGSC0003DMT400002019	Potato	golgi, vacuole	26.39	23.81
PGSC0003DMT400025955	Potato	extracellular	25.33	23.3
PGSC0003DMT400022567	Potato	extracellular	20.58	22.41
PGSC0003DMT400040781	Potato	cytosol	22.96	21.8
PGSC0003DMT400044046	Potato	cytosol	15.57	21.45
PGSC0003DMT400040802	Potato	mitochondrion	8.44	21.33
PGSC0003DMT400002016	Potato	cytosol	14.51	21.32
PGSC0003DMT400044055	Potato	cytosol	20.05	20.88
PGSC0003DMT400036586	Potato	cytosol	10.55	17.24
PGSC0003DMT400058995	Potato	cytosol	5.8	13.75

Protein Annotations

EntrezGene:102588033	Gene3D:3.40.1090.10	MapMan:5.7.2.2.4	InterPro:Acyl_Trfase/lysoPLipase	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016042	GO:GO:0016787
InterPro:IPR002641	UniProt:M1AZA1	PFAM:PF01734	EnsemblPlantsGene:PGSC0003DMG400012878	PGSC:PGSC0003DMG400012878	EnsemblPlants:PGSC0003DMT400033524
InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32241	PANTHER:PTHR32241:SF5	SUPFAM:SSF52151	UniParc:UPI0002960897
RefSeq:XP_006349680.1	SEG:seg	:	:	:	:

Description

Patatin T5 [Source:PGSC_GENE;Acc:PGSC0003DMG400012878]

Coordinates

chr9:-:47707264..47709221

Molecular Weight (calculated)

41093.5 Da

IEP (calculated)

8.881

GRAVY (calculated)

-0.102

Length

379 amino acids

Sequence
(BLAST)

001: MDFSKISLEI FSKLEQKWLY HYEGKKTRVL SIDGGGTTGI VAGAALIHLE NQICAKTGDP HVRISDFFDI VVGTGIGAIY AAMLVVDGGD GRPLFTAKDA
101: VKFVKENQSR LFKAKKVGVL RRKKRFSGKS MEKVLKEVFR REDGKALTLR DTCKPLLVPC FDLNSSAPFV FSRADAIESF SYDFDLWKVC RATSANPSMF
201: KPFNLESIDG KTSCLAVDGG LVMNNPAAAA VTHVLHNKRD FPAVTGVDDL LVLSLGNGPL NSTTNLKMRN DGYCSPLSVV GIVFDGVSET VDQMLGNAFC
301: WNPNDYVRVQ ATGYASGGVE EALEERGVES LPFGGKRLLT ETNGQRIGGL VQRLVATGRS SVPPSPCKDV AVSPLRNGR

Best Arabidopsis Sequence Match ( AT3G63200.1 )
(BLAST)

001: MEMDLSKVTL DIFTKLEQKW LSHCDSSRKT RILSIDGGGT TGIVAAASIL HLEHQIRLQT GDPHAHISDF FDIVAGTGIG GILAALLVAD DGSGRPMFTA
101: RDAVKFVAEK NSELFEIRYT GVFRRNKRYS GKSMERVLET AFRREDGKVL TMKDTCKPLL VPCYDLKTSA PFVFSRAGAS ESPSFDFELW KVCRATSATP
201: SLFKPFSVVS VDGKTSCSAV DGGLVMNNPT AAAVTHVLHN KRDFPSVNGV DDLLVLSLGN GPSTMSSSPG RKLRRNGDYS TSSVVDIVVD GVSDTVDQML
301: GNAFCWNRTD YVRIQANGLT SGGAEELLKE RGVETAPFGV KRILTESNGE RIEGFVQRLV ASGKSSLPPS PCKESAVNPL ADGR

Arabidopsis Description

PLP9Probable inactive patatin-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZQ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.