Factsheet for PGSC0003DMT400060460

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
vacuole 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400036930

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39450.1	PGSC0003DMT400036930	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054730.2.1	Tomato	cytosol, peroxisome, plasma membrane	98.0	98.0
CDY20436	Canola	endoplasmic reticulum, extracellular	27.18	88.62
CDY20439	Canola	endoplasmic reticulum, extracellular	27.18	88.62
KRH01581	Soybean	cytosol	82.54	83.59
KRH70520	Soybean	cytosol	82.04	83.08
VIT_13s0019g00020.t01	Wine grape	cytosol, peroxisome, plasma membrane	82.04	82.46
CDY53587	Canola	cytosol, nucleus, peroxisome	80.05	82.1
Bra005039.1-P	Field mustard	cytosol, nucleus, peroxisome	74.31	81.87
AT2G39450.1	Thale cress	cytosol, peroxisome, plasma membrane	79.8	81.22
GSMUA_Achr9P03180_001	Banana	cytosol, peroxisome, plasma membrane	78.05	79.24
Bra017071.1-P	Field mustard	nucleus	77.81	79.19
CDY07013	Canola	cytosol	78.05	79.04
CDX93260	Canola	cytosol	77.81	78.79
HORVU3Hr1G086970.1	Barley	cytosol, peroxisome, plasma membrane	77.31	77.69
TraesCS3D01G349500.1	Wheat	cytosol, peroxisome, plasma membrane	78.05	77.48
TraesCS3A01G355500.2	Wheat	cytosol, peroxisome, plasma membrane	78.05	77.48
TraesCS3B01G388400.1	Wheat	cytosol, peroxisome, plasma membrane	77.81	77.23
HORVU1Hr1G071930.2	Barley	cytosol	77.06	76.49
Os01t0837800-01	Rice	cytosol	78.55	75.9
TraesCS1D01G286000.1	Wheat	cytosol, peroxisome, plasma membrane	76.81	75.68
TraesCS1A01G287100.1	Wheat	cytosol, peroxisome, plasma membrane	76.56	75.43
EES03850	Sorghum	cytosol, peroxisome, plasma membrane	76.81	75.31
TraesCS1B01G296500.1	Wheat	cytosol, peroxisome, plasma membrane	76.56	75.25
Zm00001d042939_P002	Maize	cytosol, peroxisome, plasma membrane	76.31	72.68
Os05t0461900-00	Rice	cytosol	66.58	71.01
CDY20438	Canola	cytosol	39.4	68.4
GSMUA_Achr5P29180_001	Banana	plasma membrane	76.56	67.92
CDY20435	Canola	cytosol, mitochondrion, nucleus, peroxisome	39.4	58.52
PGSC0003DMT400029243	Potato	cytosol, peroxisome, plasma membrane	57.36	51.22
PGSC0003DMT400002845	Potato	cytosol	49.88	50.63
PGSC0003DMT400024996	Potato	cytosol, peroxisome, plasma membrane, plastid	43.64	49.72
PGSC0003DMT400081988	Potato	cytosol	49.63	49.14
PGSC0003DMT400010945	Potato	cytosol	48.38	46.86

Protein Annotations

Gene3D:1.20.1510.10	EntrezGene:102601019	MapMan:24.2.9.2.2	Gene3D:3.30.70.1350	InterPro:Cation_efflux	InterPro:Cation_efflux_CTD
InterPro:Cation_efflux_CTD_sf	InterPro:Cation_efflux_TMD_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
GO:GO:0071421	GO:GO:0098655	InterPro:IPR027469	InterPro:IPR036837	UniProt:M1C5X3	PFAM:PF01545
PFAM:PF16916	EnsemblPlantsGene:PGSC0003DMG400023516	PGSC:PGSC0003DMG400023516	EnsemblPlants:PGSC0003DMT400060460	PANTHER:PTHR43840	PANTHER:PTHR43840:SF5
SUPFAM:SSF160240	SUPFAM:SSF161111	TIGRFAMs:TIGR01297	TMHMM:TMhelix	UniParc:UPI000296BF74	RefSeq:XP_006345931.1
SEG:seg	:	:	:	:	:

Description

Cation efflux protein/ zinc transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400023516]

Coordinates

chr5:+:50482662..50488463

Molecular Weight (calculated)

45242.7 Da

IEP (calculated)

4.813

GRAVY (calculated)

0.081

Length

401 amino acids

Sequence
(BLAST)

001: MLELVPPDGD HGGECGGEEQ LLLMEANNVD RSWRLNFDEL RLSSENKEKP HPHGLHDCLG VLSQEDNIAV YYQQQVEMLV GFNEMDALAD RGFVPGMSKE
101: EREKLARSET TAIRISNIAN MVLFAAKVYA SVKSGSLAII ASTLDSLLDL LSGFILWFTA FSMQTPNPYQ YPIGKKRMQP LGILVFASVM ATLGLQIILE
201: SMRTLISDES DFSLTKEQER WVIGIMVFVT LVKLVLVLYC RSFTNEIVKA YAQDHFFDVV TNIIGLVAAL LANYFSGWID PVGAMILALY TIRTWSMTVL
301: ENVNSLIGKA AAPEYLQKLT YLCWNHHKAI KHIDTVRAYT FGSHYFVEVD IVLPADMPLQ EAHDIGESLQ EKLELLPEIE RAFVHLDYEY SHKPEHAQAY
401: L

Best Arabidopsis Sequence Match ( AT2G39450.1 )
(BLAST)

001: MVEPASPDSD EGISLLEFHG NGDRSWQLNF DDFQVSPEHK EKKSPSKLHN CLGCLGPEDN VADYYQQQVE MLEGFTEMDE LAERGFVPGM SKEEQDNLAK
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC

Arabidopsis Description

MTP11MTP11 [Source:UniProtKB/TrEMBL;Acc:A0A178VPD8]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.