Factsheet for GSMUA_Achr5P29180_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 2
golgi 3
vacuole 3
extracellular 2
endoplasmic reticulum 2
plasma membrane 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr6P16380_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39450.1	GSMUA_Achr10P...	AT5G51010.1	21798944
AT2G39450.1	GSMUA_Achr6P16380_001	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P03180_001	Banana	cytosol, peroxisome, plasma membrane	76.99	88.1
CDY20436	Canola	endoplasmic reticulum, extracellular	22.57	82.93
CDY20439	Canola	endoplasmic reticulum, extracellular	22.57	82.93
HORVU3Hr1G086970.1	Barley	cytosol, peroxisome, plasma membrane	70.8	80.2
TraesCS3A01G355500.2	Wheat	cytosol, peroxisome, plasma membrane	70.8	79.21
EES03850	Sorghum	cytosol, peroxisome, plasma membrane	71.24	78.73
TraesCS3D01G349500.1	Wheat	cytosol, peroxisome, plasma membrane	70.35	78.71
TraesCS3B01G388400.1	Wheat	cytosol, peroxisome, plasma membrane	70.35	78.71
Os01t0837800-01	Rice	cytosol	72.12	78.55
HORVU1Hr1G071930.2	Barley	cytosol	70.13	78.47
TraesCS1D01G286000.1	Wheat	cytosol, peroxisome, plasma membrane	70.58	78.38
TraesCS1A01G287100.1	Wheat	cytosol, peroxisome, plasma membrane	70.13	77.89
TraesCS1B01G296500.1	Wheat	cytosol, peroxisome, plasma membrane	70.13	77.7
KRH01581	Soybean	cytosol	67.92	77.53
Solyc05g054730.2.1	Tomato	cytosol, peroxisome, plasma membrane	68.36	77.06
KRH70520	Soybean	cytosol	67.48	77.02
PGSC0003DMT400060460	Potato	cytosol, peroxisome, plasma membrane	67.92	76.56
Zm00001d042939_P002	Maize	cytosol, peroxisome, plasma membrane	71.24	76.48
CDY53587	Canola	cytosol, nucleus, peroxisome	66.15	76.47
AT2G39450.1	Thale cress	cytosol, peroxisome, plasma membrane	66.37	76.14
Bra017071.1-P	Field mustard	nucleus	66.15	75.89
Bra005039.1-P	Field mustard	cytosol, nucleus, peroxisome	61.06	75.82
Os05t0461900-00	Rice	cytosol	63.05	75.8
CDX93260	Canola	cytosol	66.37	75.76
VIT_13s0019g00020.t01	Wine grape	cytosol, peroxisome, plasma membrane	66.81	75.69
CDY07013	Canola	cytosol	66.15	75.51
CDY20438	Canola	cytosol	33.19	64.94
GSMUA_Achr10P...	Banana	extracellular, golgi, mitochondrion	13.72	63.92
GSMUA_Achr10P...	Banana	peroxisome	49.56	59.1
CDY20435	Canola	cytosol, mitochondrion, nucleus, peroxisome	33.85	56.67
GSMUA_Achr8P18410_001	Banana	cytosol	50.0	56.08
GSMUA_Achr6P09720_001	Banana	peroxisome	47.57	54.85
GSMUA_Achr11P...	Banana	golgi, plasma membrane	26.77	51.49
GSMUA_Achr6P11470_001	Banana	cytosol	43.36	48.16
GSMUA_Achr10P...	Banana	cytosol	11.95	31.4
GSMUA_Achr11P...	Banana	cytosol	17.92	29.78

Protein Annotations

Gene3D:1.20.1510.10	MapMan:24.2.9.2.2	Gene3D:3.30.70.1350	InterPro:Cation_efflux	InterPro:Cation_efflux_CTD	InterPro:Cation_efflux_CTD_sf
InterPro:Cation_efflux_TMD_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812
GO:GO:0008150	GO:GO:0008324	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:0098655
EnsemblPlantsGene:GSMUA_Achr5G29180_001	EnsemblPlants:GSMUA_Achr5P29180_001	EnsemblPlants:GSMUA_Achr5T29180_001	InterPro:IPR027469	InterPro:IPR036837	UniProt:M0T2P2
PFAM:PF01545	PFAM:PF16916	PANTHER:PTHR43840	PANTHER:PTHR43840:SF14	SUPFAM:SSF160240	SUPFAM:SSF161111
SignalP:SignalP-noTM	TIGRFAMs:TIGR01297	TMHMM:TMhelix	UniParc:UPI0002948929	SEG:seg	:

Description

Putative metal tolerance protein C3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G29180_001]

Coordinates

chr5:+:29033492..29041128

Molecular Weight (calculated)

51279.2 Da

IEP (calculated)

6.329

GRAVY (calculated)

0.011

Length

452 amino acids

Sequence
(BLAST)

001: MQVLKHGHGF VFCLLGLTLA QCSRRMADAA TATMRRGLDE EGTELLLVES GERERDRERS WRLNFDGLRL SERREEPPPR RLHDCLGALG TGDVVAEYYQ
101: QQVEMLEGFN EMDALTERGF LPGMSKEERE RVAKSEKIAI RLSNVANMVL FAAKVYASIR SGSLAIIAST LDSLLDLLSG FILWFTAFKM QSRNPYQYPI
201: GKRRMQPLGI LVFASVMATL GLQIILESVR SLLSVEKEFS LTKQQEAWVV DIMLSVTLVK LGLVVYCRSF TNEIVKAYAQ DHFFDVVTNV IGLAAALLAN
301: YIANWIDPIG AIILAIYTIR TWSVTVLENV NSLVGLSAAP EYLQKITYLC WNHDKAIRHI DTVRAYTFGS HYFVEVDIVL PSEMPLREAH DIGEALQEKL
401: EQLPEIERAF VHLDYEFTHK PEHAQAHDIF LCPLVPQFRH INNSQNKQKI AM

Best Arabidopsis Sequence Match ( AT2G39450.1 )
(BLAST)

001: MVEPASPDSD EGISLLEFHG NGDRSWQLNF DDFQVSPEHK EKKSPSKLHN CLGCLGPEDN VADYYQQQVE MLEGFTEMDE LAERGFVPGM SKEEQDNLAK
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC

Arabidopsis Description

MTP11MTP11 [Source:UniProtKB/TrEMBL;Acc:A0A178VPD8]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.