Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G215500.1 | |
| TraesCS4B01G100700.1 | |
| TraesCS4D01G097300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39450.1 | TraesCS4A01G215500.1 | AT5G51010.1 | 21798944 |
| AT2G39450.1 | TraesCS4B01G100700.1 | AT5G51010.1 | 21798944 |
| AT2G39450.1 | TraesCS4D01G097300.1 | AT5G51010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G287100.1 | Wheat | cytosol, peroxisome, plasma membrane | 98.53 | 98.53 |
| TraesCS1B01G296500.1 | Wheat | cytosol, peroxisome, plasma membrane | 98.28 | 98.04 |
| HORVU1Hr1G071930.2 | Barley | cytosol | 95.82 | 96.53 |
| CDY20436 | Canola | endoplasmic reticulum, extracellular | 25.8 | 85.37 |
| CDY20439 | Canola | endoplasmic reticulum, extracellular | 25.8 | 85.37 |
| TraesCS3D01G349500.1 | Wheat | cytosol, peroxisome, plasma membrane | 84.03 | 84.65 |
| Os05t0461900-00 | Rice | cytosol | 77.4 | 83.78 |
| GSMUA_Achr9P03180_001 | Banana | cytosol, peroxisome, plasma membrane | 79.85 | 82.28 |
| KRH01581 | Soybean | cytosol | 76.41 | 78.54 |
| CDY53587 | Canola | cytosol, nucleus, peroxisome | 74.94 | 78.01 |
| AT2G39450.1 | Thale cress | cytosol, peroxisome, plasma membrane | 75.18 | 77.67 |
| KRH70520 | Soybean | cytosol | 75.43 | 77.53 |
| Solyc05g054730.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 76.17 | 77.31 |
| Bra005039.1-P | Field mustard | cytosol, nucleus, peroxisome | 69.04 | 77.2 |
| PGSC0003DMT400060460 | Potato | cytosol, peroxisome, plasma membrane | 75.68 | 76.81 |
| Bra017071.1-P | Field mustard | nucleus | 74.2 | 76.65 |
| CDY07013 | Canola | cytosol | 74.45 | 76.52 |
| CDX93260 | Canola | cytosol | 74.45 | 76.52 |
| VIT_13s0019g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 73.96 | 75.44 |
| GSMUA_Achr5P29180_001 | Banana | plasma membrane | 78.38 | 70.58 |
| CDY20438 | Canola | cytosol | 37.59 | 66.23 |
| CDY20435 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 38.33 | 57.78 |
| TraesCS3D01G038000.3 | Wheat | cytosol | 54.55 | 56.63 |
| TraesCS4D01G234400.1 | Wheat | cytosol, peroxisome, plasma membrane | 47.17 | 48.0 |
| TraesCS6D01G302400.1 | Wheat | cytosol | 47.17 | 42.67 |
Protein Annotations
| Gene3D:1.20.1510.10 | MapMan:24.2.9.2.2 | Gene3D:3.30.70.1350 | InterPro:Cation_efflux | InterPro:Cation_efflux_CTD | InterPro:Cation_efflux_CTD_sf |
| InterPro:Cation_efflux_TMD_sf | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006812 |
| GO:GO:0008150 | GO:GO:0008324 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR027469 |
| InterPro:IPR036837 | PFAM:PF01545 | PFAM:PF16916 | PANTHER:PTHR43840 | PANTHER:PTHR43840:SF14 | SUPFAM:SSF160240 |
| SUPFAM:SSF161111 | TIGRFAMs:TIGR01297 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS1D01G286000 | EnsemblPlants:TraesCS1D01G286000.1 | SEG:seg |
Description
No Description!
Coordinates
chr1D:+:384140287..384143333
Molecular Weight (calculated)
45651.0 Da
IEP (calculated)
4.704
GRAVY (calculated)
0.039
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGGTAEGE ELFLLRSAEE GEGEGDGLCV GERPWRLNFD GFRRQGPQQE NPPSRGLQDC LGVLAQGPGD VVAEYYQQQL EMLEGFNEMD TLTDRGCLPG
101: LSKEEREKIA RSETLAIRLS NIANMVLFAA KVYASIRSGS LAIIASTLDS LLDLLSGFIL WFTAFSMQTP NPYRYPIGKR RMQPLGILVF ASVMATLGLQ
201: IILESTRSLL SSNGAEFRLT KEQEMWVVNI MLAVTLVKLL LVIYCRSFTN EIVKAYAQDH FFDVITNIIG LVAALLANYF EGWIDPVGAI ILAIYTIRTW
301: SMTVLENVHS LVGQSASPEF LQKLTYLCWN HHKAVRHIDT VRAYTFGSHY FVEVDIVLPC DMPLQEAHDI GEALQEKLES LPEIERAFVH LDYEFTHQPE
401: HARSYDT
101: LSKEEREKIA RSETLAIRLS NIANMVLFAA KVYASIRSGS LAIIASTLDS LLDLLSGFIL WFTAFSMQTP NPYRYPIGKR RMQPLGILVF ASVMATLGLQ
201: IILESTRSLL SSNGAEFRLT KEQEMWVVNI MLAVTLVKLL LVIYCRSFTN EIVKAYAQDH FFDVITNIIG LVAALLANYF EGWIDPVGAI ILAIYTIRTW
301: SMTVLENVHS LVGQSASPEF LQKLTYLCWN HHKAVRHIDT VRAYTFGSHY FVEVDIVLPC DMPLQEAHDI GEALQEKLES LPEIERAFVH LDYEFTHQPE
401: HARSYDT
001: MVEPASPDSD EGISLLEFHG NGDRSWQLNF DDFQVSPEHK EKKSPSKLHN CLGCLGPEDN VADYYQQQVE MLEGFTEMDE LAERGFVPGM SKEEQDNLAK
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC
Arabidopsis Description
MTP11MTP11 [Source:UniProtKB/TrEMBL;Acc:A0A178VPD8]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.