Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39450.1 | CDX84893 | AT5G51010.1 | 21798944 |
| AT2G39450.1 | CDY45796 | AT5G51010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005039.1-P | Field mustard | cytosol, nucleus, peroxisome | 93.09 | 100.0 |
| CDY20436 | Canola | endoplasmic reticulum, extracellular | 31.2 | 99.19 |
| CDY20439 | Canola | endoplasmic reticulum, extracellular | 31.2 | 99.19 |
| AT2G39450.1 | Thale cress | cytosol, peroxisome, plasma membrane | 96.42 | 95.69 |
| CDY07013 | Canola | cytosol | 96.42 | 95.2 |
| CDX93260 | Canola | cytosol | 95.65 | 94.44 |
| KRH01581 | Soybean | cytosol | 83.38 | 82.32 |
| KRH70520 | Soybean | cytosol | 83.38 | 82.32 |
| CDY20438 | Canola | cytosol | 48.34 | 81.82 |
| VIT_13s0019g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 82.35 | 80.7 |
| Solyc05g054730.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 82.61 | 80.55 |
| PGSC0003DMT400060460 | Potato | cytosol, peroxisome, plasma membrane | 82.1 | 80.05 |
| GSMUA_Achr9P03180_001 | Banana | cytosol, peroxisome, plasma membrane | 77.75 | 76.96 |
| HORVU3Hr1G086970.1 | Barley | cytosol, peroxisome, plasma membrane | 77.49 | 75.94 |
| TraesCS3B01G388400.1 | Wheat | cytosol, peroxisome, plasma membrane | 78.26 | 75.74 |
| TraesCS3A01G355500.2 | Wheat | cytosol, peroxisome, plasma membrane | 78.01 | 75.5 |
| TraesCS3D01G349500.1 | Wheat | cytosol, peroxisome, plasma membrane | 77.75 | 75.25 |
| HORVU1Hr1G071930.2 | Barley | cytosol | 77.49 | 75.0 |
| TraesCS1D01G286000.1 | Wheat | cytosol, peroxisome, plasma membrane | 78.01 | 74.94 |
| TraesCS1B01G296500.1 | Wheat | cytosol, peroxisome, plasma membrane | 78.01 | 74.75 |
| TraesCS1A01G287100.1 | Wheat | cytosol, peroxisome, plasma membrane | 77.49 | 74.45 |
| EES03850 | Sorghum | cytosol, peroxisome, plasma membrane | 77.75 | 74.33 |
| Os01t0837800-01 | Rice | cytosol | 78.26 | 73.73 |
| Zm00001d042939_P002 | Maize | cytosol, peroxisome, plasma membrane | 76.98 | 71.5 |
| Os05t0461900-00 | Rice | cytosol | 68.03 | 70.74 |
| CDY20435 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 48.34 | 70.0 |
| CDY51006 | Canola | golgi, plasma membrane | 37.08 | 66.51 |
| GSMUA_Achr5P29180_001 | Banana | plasma membrane | 76.47 | 66.15 |
| CDY61375 | Canola | golgi | 32.23 | 58.88 |
| CDX81760 | Canola | plasma membrane | 56.01 | 57.63 |
| CDX87376 | Canola | cytosol | 58.06 | 56.47 |
| CDX88546 | Canola | cytosol | 58.06 | 56.47 |
| CDY35081 | Canola | cytosol, peroxisome, plasma membrane, plastid | 57.03 | 55.75 |
| CDY33342 | Canola | cytosol, peroxisome, plasma membrane, plastid | 57.03 | 55.75 |
| CDY06055 | Canola | cytosol, peroxisome, plasma membrane | 48.34 | 46.1 |
| CDX71976 | Canola | cytosol, peroxisome, plasma membrane | 47.83 | 45.61 |
| CDX88969 | Canola | cytosol, peroxisome, plasma membrane | 46.55 | 44.94 |
| CDY67929 | Canola | cytosol | 46.29 | 44.69 |
| CDY57242 | Canola | cytosol | 46.55 | 44.39 |
| CDY56242 | Canola | cytosol, peroxisome, plasma membrane | 46.29 | 44.15 |
| CDX88395 | Canola | endoplasmic reticulum, extracellular | 12.28 | 35.04 |
Protein Annotations
| Gene3D:1.20.1510.10 | MapMan:24.2.9.2.2 | Gene3D:3.30.70.1350 | GO:A0A078IUB7 | UniProt:A0A078IUB7 | EnsemblPlants:CDY53587 |
| ProteinID:CDY53587 | ProteinID:CDY53587.1 | InterPro:Cation_efflux | InterPro:Cation_efflux_CTD | InterPro:Cation_efflux_CTD_sf | InterPro:Cation_efflux_TMD_sf |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006812 | GO:GO:0008150 |
| GO:GO:0008324 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | GO:GO:0098655 | EnsemblPlantsGene:GSBRNA2T00011035001 |
| InterPro:IPR027469 | InterPro:IPR036837 | PFAM:PF01545 | PFAM:PF16916 | PANTHER:PTHR43840 | PANTHER:PTHR43840:SF5 |
| SUPFAM:SSF160240 | SUPFAM:SSF161111 | TIGRFAMs:TIGR01297 | TMHMM:TMhelix | UniParc:UPI0004EEDD02 | SEG:seg |
Description
BnaA05g34600DBnaA05g34600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUB7]
Coordinates
chrLK033218:-:17932..20107
Molecular Weight (calculated)
44307.5 Da
IEP (calculated)
5.024
GRAVY (calculated)
0.045
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRPDGEEGI LLLEFHGNGD RSWQLNFDDF QVSPEHKEKK SPSKLHNCLG CLGPEDNVAD YYQQQVEMLE GFTEMDELAE RGFVPGMSKE EQDNLAKSET
101: LAIRISNIAN MVLFAAKVYA SVTSGSLAIV ASTLDSLLDL LSGFILWFTA FSMQTPNPYQ YPIGKKRMQP LGILVFASVM ATLGLQIILE SLRTMLSSHK
201: EFSLTKEQES WVVGIMLSVT LVKLLLVLYC RSFSNEIVKA YAQDHFFDVI TNIIGLIAVI LANYFDNWMD PVGAIILALY TIRTWSMTVL ENVNSLVGKT
301: ATPEYLQKLT YLCWNHHKAI RHIDTVRAYT FGSHYFVEVD IVLPADMPLQ VAHDIGESLQ EKLELLQEIE RAFVHLDYEY THKPEHARSH C
101: LAIRISNIAN MVLFAAKVYA SVTSGSLAIV ASTLDSLLDL LSGFILWFTA FSMQTPNPYQ YPIGKKRMQP LGILVFASVM ATLGLQIILE SLRTMLSSHK
201: EFSLTKEQES WVVGIMLSVT LVKLLLVLYC RSFSNEIVKA YAQDHFFDVI TNIIGLIAVI LANYFDNWMD PVGAIILALY TIRTWSMTVL ENVNSLVGKT
301: ATPEYLQKLT YLCWNHHKAI RHIDTVRAYT FGSHYFVEVD IVLPADMPLQ VAHDIGESLQ EKLELLQEIE RAFVHLDYEY THKPEHARSH C
001: MVEPASPDSD EGISLLEFHG NGDRSWQLNF DDFQVSPEHK EKKSPSKLHN CLGCLGPEDN VADYYQQQVE MLEGFTEMDE LAERGFVPGM SKEEQDNLAK
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC
Arabidopsis Description
MTP11MTP11 [Source:UniProtKB/TrEMBL;Acc:A0A178VPD8]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.