Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G043650.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39450.1 | HORVU4Hr1G043650.2 | AT5G51010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G287100.1 | Wheat | cytosol, peroxisome, plasma membrane | 96.78 | 96.07 |
| TraesCS1B01G296500.1 | Wheat | cytosol, peroxisome, plasma membrane | 96.78 | 95.83 |
| TraesCS1D01G286000.1 | Wheat | cytosol, peroxisome, plasma membrane | 96.53 | 95.82 |
| HORVU3Hr1G086970.1 | Barley | cytosol, peroxisome, plasma membrane | 83.66 | 84.71 |
| CDY20436 | Canola | endoplasmic reticulum, extracellular | 25.74 | 84.55 |
| CDY20439 | Canola | endoplasmic reticulum, extracellular | 25.74 | 84.55 |
| GSMUA_Achr9P03180_001 | Banana | cytosol, peroxisome, plasma membrane | 80.69 | 82.53 |
| Os05t0461900-00 | Rice | cytosol | 76.24 | 81.91 |
| KRH01581 | Soybean | cytosol | 76.73 | 78.28 |
| KRH70520 | Soybean | cytosol | 76.49 | 78.03 |
| Solyc05g054730.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 77.23 | 77.81 |
| CDY53587 | Canola | cytosol, nucleus, peroxisome | 75.0 | 77.49 |
| AT2G39450.1 | Thale cress | cytosol, peroxisome, plasma membrane | 75.25 | 77.16 |
| PGSC0003DMT400060460 | Potato | cytosol, peroxisome, plasma membrane | 76.49 | 77.06 |
| Bra005039.1-P | Field mustard | cytosol, nucleus, peroxisome | 69.31 | 76.92 |
| Bra017071.1-P | Field mustard | nucleus | 75.0 | 76.9 |
| CDY07013 | Canola | cytosol | 75.25 | 76.77 |
| CDX93260 | Canola | cytosol | 75.25 | 76.77 |
| VIT_13s0019g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 74.75 | 75.69 |
| GSMUA_Achr5P29180_001 | Banana | plasma membrane | 78.47 | 70.13 |
| CDY20438 | Canola | cytosol | 37.87 | 66.23 |
| CDY20435 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 38.37 | 57.41 |
| HORVU4Hr1G065110.3 | Barley | cytosol, peroxisome | 48.51 | 41.79 |
| HORVU6Hr1G078910.2 | Barley | cytosol | 40.35 | 38.17 |
Protein Annotations
| Gene3D:1.20.1510.10 | MapMan:24.2.9.2.2 | Gene3D:3.30.70.1350 | UniProt:A0A287G628 | InterPro:Cation_efflux | InterPro:Cation_efflux_CTD |
| InterPro:Cation_efflux_CTD_sf | InterPro:Cation_efflux_TMD_sf | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006812 | GO:GO:0008150 | GO:GO:0008324 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 |
| GO:GO:0098655 | EnsemblPlantsGene:HORVU1Hr1G071930 | EnsemblPlants:HORVU1Hr1G071930.2 | InterPro:IPR027469 | InterPro:IPR036837 | PFAM:PF01545 |
| PFAM:PF16916 | PANTHER:PTHR43840 | PANTHER:PTHR43840:SF14 | SUPFAM:SSF160240 | SUPFAM:SSF161111 | TIGRFAMs:TIGR01297 |
| TMHMM:TMhelix | UniParc:UPI000B48074B | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:495404668..495410478
Molecular Weight (calculated)
45444.9 Da
IEP (calculated)
5.047
GRAVY (calculated)
0.040
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGGGVEQG EELFLLRSVE EGGGLCVGER PWRLNFDGFR RQGPQQERPP SRGLQDCLGV LAQGPGDVVA EYYQQQLEML EGFNEMDTLT DRGCLPGISK
101: EEREKIARSE TLAIRLSNIA NMVLFAAKVY ASVRSGSLAI IASTLDSLLD LLSGFILWFT AFSMQTPNPY RYPIGKRRMQ PLGILVFASV MATLGLQIIL
201: ESTRSLVSSN GAEFRLTKEQ EMWVVNIMLA VTLVKLLLVI YCRSFTNEIV KAYAQDHFFD VITNTIGLVA ALLANYFEGW IDPVGAIILA VYTIRTWSMT
301: VLENVHSLVG QSASPEFLQK LTYLCWNHHK AVRHIDTVRA YTFGSHYFVE VDIVLPCDMP LQEAHDIGEA LQEKLERLPE IERAFVHLDY EFTHQPEHAQ
401: SYDR
101: EEREKIARSE TLAIRLSNIA NMVLFAAKVY ASVRSGSLAI IASTLDSLLD LLSGFILWFT AFSMQTPNPY RYPIGKRRMQ PLGILVFASV MATLGLQIIL
201: ESTRSLVSSN GAEFRLTKEQ EMWVVNIMLA VTLVKLLLVI YCRSFTNEIV KAYAQDHFFD VITNTIGLVA ALLANYFEGW IDPVGAIILA VYTIRTWSMT
301: VLENVHSLVG QSASPEFLQK LTYLCWNHHK AVRHIDTVRA YTFGSHYFVE VDIVLPCDMP LQEAHDIGEA LQEKLERLPE IERAFVHLDY EFTHQPEHAQ
401: SYDR
001: MVEPASPDSD EGISLLEFHG NGDRSWQLNF DDFQVSPEHK EKKSPSKLHN CLGCLGPEDN VADYYQQQVE MLEGFTEMDE LAERGFVPGM SKEEQDNLAK
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC
Arabidopsis Description
MTP11MTP11 [Source:UniProtKB/TrEMBL;Acc:A0A178VPD8]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.