CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84893
CDY45796

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39450.1	CDX84893	AT5G51010.1	21798944
AT2G39450.1	CDY45796	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20438	Canola	cytosol	85.56	100.0
CDY53587	Canola	cytosol, nucleus, peroxisome	70.0	48.34
AT2G39450.1	Thale cress	cytosol, peroxisome, plasma membrane	69.63	47.72
CDY07013	Canola	cytosol	69.63	47.47
CDX93260	Canola	cytosol	69.63	47.47
Bra005039.1-P	Field mustard	cytosol, nucleus, peroxisome	61.48	45.6
VIT_13s0019g00020.t01	Wine grape	cytosol, peroxisome, plasma membrane	59.63	40.35
KRH70520	Soybean	cytosol	58.89	40.15
KRH01581	Soybean	cytosol	58.52	39.9
Solyc05g054730.2.1	Tomato	cytosol, peroxisome, plasma membrane	58.52	39.4
PGSC0003DMT400060460	Potato	cytosol, peroxisome, plasma membrane	58.52	39.4
Os05t0461900-00	Rice	cytosol	54.81	39.36
TraesCS3A01G355500.2	Wheat	cytosol, peroxisome, plasma membrane	58.89	39.36
TraesCS3B01G388400.1	Wheat	cytosol, peroxisome, plasma membrane	58.52	39.11
GSMUA_Achr9P03180_001	Banana	cytosol, peroxisome, plasma membrane	57.04	38.99
HORVU3Hr1G086970.1	Barley	cytosol, peroxisome, plasma membrane	57.41	38.85
EES03850	Sorghum	cytosol, peroxisome, plasma membrane	58.52	38.63
TraesCS3D01G349500.1	Wheat	cytosol, peroxisome, plasma membrane	57.78	38.61
Os01t0837800-01	Rice	cytosol	59.26	38.55
HORVU1Hr1G071930.2	Barley	cytosol	57.41	38.37
TraesCS1D01G286000.1	Wheat	cytosol, peroxisome, plasma membrane	57.78	38.33
TraesCS1A01G287100.1	Wheat	cytosol, peroxisome, plasma membrane	57.41	38.08
TraesCS1B01G296500.1	Wheat	cytosol, peroxisome, plasma membrane	57.41	37.99
Zm00001d042939_P002	Maize	cytosol, peroxisome, plasma membrane	58.52	37.53
CDX88395	Canola	endoplasmic reticulum, extracellular	18.15	35.77
GSMUA_Achr5P29180_001	Banana	plasma membrane	56.67	33.85
CDY61375	Canola	golgi	24.81	31.31
CDX88546	Canola	cytosol	42.22	28.36
CDX87376	Canola	cytosol	41.85	28.11
CDY35081	Canola	cytosol, peroxisome, plasma membrane, plastid	39.63	26.75
CDY33342	Canola	cytosol, peroxisome, plasma membrane, plastid	39.63	26.75
CDX81760	Canola	plasma membrane	37.41	26.58
CDY06055	Canola	cytosol, peroxisome, plasma membrane	33.33	21.95
CDY57242	Canola	cytosol	32.96	21.71
CDY67929	Canola	cytosol	32.22	21.48
CDX88969	Canola	cytosol, peroxisome, plasma membrane	32.22	21.48
CDX71976	Canola	cytosol, peroxisome, plasma membrane	32.59	21.46
CDY56242	Canola	cytosol, peroxisome, plasma membrane	32.59	21.46
CDY51006	Canola	golgi, plasma membrane	9.26	11.47
CDY20436	Canola	endoplasmic reticulum, extracellular	1.48	3.25
CDY20439	Canola	endoplasmic reticulum, extracellular	1.48	3.25

Protein Annotations

Gene3D:1.20.1510.10	MapMan:24.2.9.2.2	GO:A0A078G1K4	UniProt:A0A078G1K4	EnsemblPlants:CDY20435	ProteinID:CDY20435
ProteinID:CDY20435.1	InterPro:Cation_efflux	InterPro:Cation_efflux_TMD_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	GO:GO:0098655	EnsemblPlantsGene:GSBRNA2T00012506001	InterPro:IPR027469	PFAM:PF01545	PANTHER:PTHR43840
PANTHER:PTHR43840:SF5	SUPFAM:SSF161111	TMHMM:TMhelix	UniParc:UPI0004EEDD6C	SEG:seg	:

Description

BnaC04g06090DBnaC04g06090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1K4]

Coordinates

chrLK032108:+:34556..36416

Molecular Weight (calculated)

30166.4 Da

IEP (calculated)

5.616

GRAVY (calculated)

-0.156

Length

270 amino acids

Sequence
(BLAST)

001: MAMSRDILKP LRGRHADKTK LHLFKAVSPP PPNLYLTEVM ARPDGEEGIL LLEFHGNGDR SWQLNFDDFQ VSPEHKEKKS PSKLHNCLGC LGPEDNVADY
101: YQQQVEMLEG FTEMDELAER GFVPGMSKEE QDNLAKSETL AIRISNIANM LLFAAKVYAS VTSGSLAIVA STLDSLLDLL SGFILWFTAF SMQTPNPYQY
201: PIGKKRMQPL GILVFASVMA TLGLQIILES LRTNHKEFSL TKEQRELGGW DHALCYIGQT ASCSLLQIVQ

Best Arabidopsis Sequence Match ( AT1G79520.1 )
(BLAST)

001: MAATEHRGLS GGDYNVDLLP IDQDDSPPSS WRLSLDTFRL PSSSPLSSGR HNGRTRLSRY LRTPKKERKV SEYYKQQEKL LEGFNEMETI NETGFVSGAP
101: TEEELKKLAK SERLAVHISN AANLVLFVAK VYASVESRSM AVIASTLDSL LDLLSGFILW FTANAMRTPN NFRYPIGKRR MQPVGIIVFA SVMATLGLQV
201: ILESTRLLVS KNGSHMSSTE EKWMIGIMAS ATVVKFLLML YCRSFQNEIV RAYAQDHLFD VITNSVGLAT AVLAVKFYWW IDPSGAILIA LYTISTWART
301: VLENVHSLIG RSAPPDFLAK LTFLIWNHHE KIKHIDTVRA YTFGSHYFVE VDIVLPEDMR LHEAHNIGET LQEKLEQLSE VERAFVHIDF EFTHRPEHKC
401: KV

Arabidopsis Description

Cation efflux family protein [Source:UniProtKB/TrEMBL;Acc:F4IF62]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.