Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39450.1 | CDX84893 | AT5G51010.1 | 21798944 |
| AT2G39450.1 | CDY45796 | AT5G51010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07013 | Canola | cytosol | 99.24 | 99.24 |
| CDY53587 | Canola | cytosol, nucleus, peroxisome | 94.44 | 95.65 |
| CDY20436 | Canola | endoplasmic reticulum, extracellular | 29.29 | 94.31 |
| CDY20439 | Canola | endoplasmic reticulum, extracellular | 29.29 | 94.31 |
| AT2G39450.1 | Thale cress | cytosol, peroxisome, plasma membrane | 93.18 | 93.65 |
| KRH70520 | Soybean | cytosol | 80.81 | 80.81 |
| KRH01581 | Soybean | cytosol | 80.81 | 80.81 |
| CDY20438 | Canola | cytosol | 46.72 | 80.09 |
| VIT_13s0019g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 79.8 | 79.2 |
| Solyc05g054730.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 79.29 | 78.3 |
| PGSC0003DMT400060460 | Potato | cytosol, peroxisome, plasma membrane | 78.79 | 77.81 |
| GSMUA_Achr9P03180_001 | Banana | cytosol, peroxisome, plasma membrane | 76.77 | 76.96 |
| HORVU3Hr1G086970.1 | Barley | cytosol, peroxisome, plasma membrane | 76.26 | 75.69 |
| TraesCS3B01G388400.1 | Wheat | cytosol, peroxisome, plasma membrane | 77.02 | 75.5 |
| HORVU1Hr1G071930.2 | Barley | cytosol | 76.77 | 75.25 |
| TraesCS3A01G355500.2 | Wheat | cytosol, peroxisome, plasma membrane | 76.77 | 75.25 |
| TraesCS3D01G349500.1 | Wheat | cytosol, peroxisome, plasma membrane | 76.52 | 75.0 |
| EES03850 | Sorghum | cytosol, peroxisome, plasma membrane | 77.27 | 74.82 |
| TraesCS1B01G296500.1 | Wheat | cytosol, peroxisome, plasma membrane | 77.02 | 74.75 |
| TraesCS1D01G286000.1 | Wheat | cytosol, peroxisome, plasma membrane | 76.52 | 74.45 |
| TraesCS1A01G287100.1 | Wheat | cytosol, peroxisome, plasma membrane | 76.52 | 74.45 |
| Os01t0837800-01 | Rice | cytosol | 77.27 | 73.73 |
| Zm00001d042939_P002 | Maize | cytosol, peroxisome, plasma membrane | 77.02 | 72.45 |
| Os05t0461900-00 | Rice | cytosol | 67.42 | 71.01 |
| CDY20435 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 47.47 | 69.63 |
| CDY51006 | Canola | golgi, plasma membrane | 36.87 | 66.97 |
| GSMUA_Achr5P29180_001 | Banana | plasma membrane | 75.76 | 66.37 |
| CDY61375 | Canola | golgi | 32.07 | 59.35 |
| CDX81760 | Canola | plasma membrane | 55.3 | 57.63 |
| CDX88546 | Canola | cytosol | 57.58 | 56.72 |
| CDX87376 | Canola | cytosol | 57.58 | 56.72 |
| CDY33342 | Canola | cytosol, peroxisome, plasma membrane, plastid | 56.82 | 56.25 |
| CDY35081 | Canola | cytosol, peroxisome, plasma membrane, plastid | 56.82 | 56.25 |
| CDY06055 | Canola | cytosol, peroxisome, plasma membrane | 46.97 | 45.37 |
| CDX71976 | Canola | cytosol, peroxisome, plasma membrane | 46.46 | 44.88 |
| CDY67929 | Canola | cytosol | 45.45 | 44.44 |
| CDX88969 | Canola | cytosol, peroxisome, plasma membrane | 45.45 | 44.44 |
| CDY57242 | Canola | cytosol | 44.95 | 43.41 |
| CDY56242 | Canola | cytosol, peroxisome, plasma membrane | 44.7 | 43.17 |
| CDX88395 | Canola | endoplasmic reticulum, extracellular | 12.12 | 35.04 |
Protein Annotations
| Gene3D:1.20.1510.10 | MapMan:24.2.9.2.2 | Gene3D:3.30.70.1350 | GO:A0A078DVA2 | EnsemblPlants:CDX93260 | ProteinID:CDX93260 |
| ProteinID:CDX93260.1 | InterPro:Cation_efflux | InterPro:Cation_efflux_CTD | InterPro:Cation_efflux_CTD_sf | InterPro:Cation_efflux_TMD_sf | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006812 | GO:GO:0008150 |
| GO:GO:0008324 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | EnsemblPlantsGene:GSBRNA2T00155218001 | InterPro:IPR027469 |
| InterPro:IPR036837 | PFAM:PF01545 | PFAM:PF16916 | PANTHER:PTHR43840 | PANTHER:PTHR43840:SF5 | SUPFAM:SSF160240 |
| SUPFAM:SSF161111 | TIGRFAMs:TIGR01297 | TMHMM:TMhelix | UniParc:UPI0004EB0B82 | SEG:seg | : |
Description
BnaC04g46360D
Coordinates
chrLK031875:+:627091..629024
Molecular Weight (calculated)
44658.7 Da
IEP (calculated)
4.672
GRAVY (calculated)
0.041
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MARPAIQDGD EEISLLVFNG DGDGDRSWQL NFDDFQVSPE HKEKKSPSKL HNCLGCLGPE DNVADYYQQQ VEMLEGFTEM DELAVRGFVP GMSKEEQDNL
101: AKSETLAIRI SNIANMVLFA AKVYASVTSG SLAIVASTLD SLLDLLSGFI LWFTAFSMQT PNPYQYPIGK KRMQPLGILV FASVMATLGL QIILESLRTM
201: VSSQKEFSLT KEQESWVVGI MLSVTLVKLL LVLYCRSFSN EIVKAYAQDH FFDVITNIIG LIAVILANYI DNWMDPVGAI ILALYTIRTW SMTVLENVNS
301: LVGKSATPEY LQKLTYLCWN HHREIRHIDT VRAYTFGSHY FVEVDIVLPA DMPLQVAHDI GEALQEKLEQ LQEIERAFVH LDYEYTHKPE HASSHC
101: AKSETLAIRI SNIANMVLFA AKVYASVTSG SLAIVASTLD SLLDLLSGFI LWFTAFSMQT PNPYQYPIGK KRMQPLGILV FASVMATLGL QIILESLRTM
201: VSSQKEFSLT KEQESWVVGI MLSVTLVKLL LVLYCRSFSN EIVKAYAQDH FFDVITNIIG LIAVILANYI DNWMDPVGAI ILALYTIRTW SMTVLENVNS
301: LVGKSATPEY LQKLTYLCWN HHREIRHIDT VRAYTFGSHY FVEVDIVLPA DMPLQVAHDI GEALQEKLEQ LQEIERAFVH LDYEYTHKPE HASSHC
001: MVEPASPDSD EGISLLEFHG NGDRSWQLNF DDFQVSPEHK EKKSPSKLHN CLGCLGPEDN VADYYQQQVE MLEGFTEMDE LAERGFVPGM SKEEQDNLAK
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC
Arabidopsis Description
MTP11MTP11 [Source:UniProtKB/TrEMBL;Acc:A0A178VPD8]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.