Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS4A01G215500.1 | |
TraesCS4B01G100700.1 | |
TraesCS4D01G097300.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G39450.1 | TraesCS4A01G215500.1 | AT5G51010.1 | 21798944 |
AT2G39450.1 | TraesCS4B01G100700.1 | AT5G51010.1 | 21798944 |
AT2G39450.1 | TraesCS4D01G097300.1 | AT5G51010.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3A01G355500.2 | Wheat | cytosol, peroxisome, plasma membrane | 97.77 | 97.77 |
HORVU3Hr1G086970.1 | Barley | cytosol, peroxisome, plasma membrane | 96.29 | 97.49 |
TraesCS3B01G388400.1 | Wheat | cytosol, peroxisome, plasma membrane | 97.28 | 97.28 |
Os01t0837800-01 | Rice | cytosol | 91.83 | 89.4 |
EES03850 | Sorghum | cytosol, peroxisome, plasma membrane | 88.86 | 87.78 |
CDY20436 | Canola | endoplasmic reticulum, extracellular | 26.24 | 86.18 |
CDY20439 | Canola | endoplasmic reticulum, extracellular | 26.24 | 86.18 |
Zm00001d042939_P002 | Maize | cytosol, peroxisome, plasma membrane | 88.12 | 84.56 |
TraesCS1D01G286000.1 | Wheat | cytosol, peroxisome, plasma membrane | 84.65 | 84.03 |
GSMUA_Achr9P03180_001 | Banana | cytosol, peroxisome, plasma membrane | 80.2 | 82.03 |
Solyc05g054730.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 77.72 | 78.3 |
PGSC0003DMT400060460 | Potato | cytosol, peroxisome, plasma membrane | 77.48 | 78.05 |
CDY53587 | Canola | cytosol, nucleus, peroxisome | 75.25 | 77.75 |
KRH01581 | Soybean | cytosol | 75.99 | 77.53 |
KRH70520 | Soybean | cytosol | 75.74 | 77.27 |
Bra005039.1-P | Field mustard | cytosol, nucleus, peroxisome | 69.55 | 77.2 |
AT2G39450.1 | Thale cress | cytosol, peroxisome, plasma membrane | 75.0 | 76.9 |
Bra017071.1-P | Field mustard | nucleus | 74.75 | 76.65 |
CDY07013 | Canola | cytosol | 75.0 | 76.52 |
CDX93260 | Canola | cytosol | 75.0 | 76.52 |
VIT_13s0019g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 75.0 | 75.94 |
GSMUA_Achr5P29180_001 | Banana | plasma membrane | 78.71 | 70.35 |
CDY20438 | Canola | cytosol | 38.12 | 66.67 |
TraesCS3D01G038000.3 | Wheat | cytosol | 56.19 | 57.91 |
CDY20435 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 38.61 | 57.78 |
TraesCS4D01G234400.1 | Wheat | cytosol, peroxisome, plasma membrane | 47.52 | 48.0 |
TraesCS6D01G302400.1 | Wheat | cytosol | 46.29 | 41.56 |
Protein Annotations
Gene3D:1.20.1510.10 | MapMan:24.2.9.2.2 | Gene3D:3.30.70.1350 | InterPro:Cation_efflux | InterPro:Cation_efflux_CTD | InterPro:Cation_efflux_CTD_sf |
InterPro:Cation_efflux_TMD_sf | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006812 |
GO:GO:0008150 | GO:GO:0008324 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR027469 |
InterPro:IPR036837 | PFAM:PF01545 | PFAM:PF16916 | PANTHER:PTHR43840 | PANTHER:PTHR43840:SF14 | SUPFAM:SSF160240 |
SUPFAM:SSF161111 | TIGRFAMs:TIGR01297 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS3D01G349500 | EnsemblPlants:TraesCS3D01G349500.1 | SEG:seg |
Description
No Description!
Coordinates
chr3D:-:460937049..460948037
Molecular Weight (calculated)
45005.2 Da
IEP (calculated)
5.162
GRAVY (calculated)
0.040
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGGASGEG EELRLLAAAE AGDGGAPAGE KSWRLNFDGL RPPEARQERP ARGLHYHCLG VIGQAPEDVV AEYYQQQVEM LEGFNEMDAL TDRGFLPGMS
101: KEEREQVARS ETLAIRLSNI ANMVLFAAKV YASVRSGSLA IIASTLDSLL DLLSGFILWF TAFSMQTPNP YRYPIGKKRM QPLGILVFAS VMATLGLQII
201: LESTRSLLSD GGEFSLTKEQ EKWVVDIMFS VTLVKLALAL YCRTFTNEIV KAYAQDHIFD VITNIIGLVA ALLANYFEGW IDPVGAIILA IYTIRTWSMT
301: VLENVHSLVG QSASPEYLQK LTYLCWNHHK AVRHIDTVRA YTFGSHYFVE VDIVLPAGMP LQEAHDIGEA LQEKLERLPE IERAFVHLDY EFTHRPEHAL
401: SHEK
101: KEEREQVARS ETLAIRLSNI ANMVLFAAKV YASVRSGSLA IIASTLDSLL DLLSGFILWF TAFSMQTPNP YRYPIGKKRM QPLGILVFAS VMATLGLQII
201: LESTRSLLSD GGEFSLTKEQ EKWVVDIMFS VTLVKLALAL YCRTFTNEIV KAYAQDHIFD VITNIIGLVA ALLANYFEGW IDPVGAIILA IYTIRTWSMT
301: VLENVHSLVG QSASPEYLQK LTYLCWNHHK AVRHIDTVRA YTFGSHYFVE VDIVLPAGMP LQEAHDIGEA LQEKLERLPE IERAFVHLDY EFTHRPEHAL
401: SHEK
001: MVEPASPDSD EGISLLEFHG NGDRSWQLNF DDFQVSPEHK EKKSPSKLHN CLGCLGPEDN VADYYQQQVE MLEGFTEMDE LAERGFVPGM SKEEQDNLAK
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC
Arabidopsis Description
MTP11MTP11 [Source:UniProtKB/TrEMBL;Acc:A0A178VPD8]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.