Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- vacuole 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g118130.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39450.1 | Solyc03g118130.2.1 | AT5G51010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400060460 | Potato | cytosol, peroxisome, plasma membrane | 98.0 | 98.0 |
| CDY20436 | Canola | endoplasmic reticulum, extracellular | 27.43 | 89.43 |
| CDY20439 | Canola | endoplasmic reticulum, extracellular | 27.43 | 89.43 |
| KRH70520 | Soybean | cytosol | 83.04 | 84.09 |
| KRH01581 | Soybean | cytosol | 83.04 | 84.09 |
| VIT_13s0019g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 82.79 | 83.21 |
| CDY53587 | Canola | cytosol, nucleus, peroxisome | 80.55 | 82.61 |
| Bra005039.1-P | Field mustard | cytosol, nucleus, peroxisome | 74.81 | 82.42 |
| AT2G39450.1 | Thale cress | cytosol, peroxisome, plasma membrane | 80.3 | 81.73 |
| GSMUA_Achr9P03180_001 | Banana | cytosol, peroxisome, plasma membrane | 78.55 | 79.75 |
| Bra017071.1-P | Field mustard | nucleus | 78.3 | 79.7 |
| CDY07013 | Canola | cytosol | 78.55 | 79.55 |
| CDX93260 | Canola | cytosol | 78.3 | 79.29 |
| HORVU3Hr1G086970.1 | Barley | cytosol, peroxisome, plasma membrane | 77.56 | 77.94 |
| TraesCS3A01G355500.2 | Wheat | cytosol, peroxisome, plasma membrane | 78.3 | 77.72 |
| TraesCS3D01G349500.1 | Wheat | cytosol, peroxisome, plasma membrane | 78.3 | 77.72 |
| TraesCS3B01G388400.1 | Wheat | cytosol, peroxisome, plasma membrane | 78.05 | 77.48 |
| HORVU1Hr1G071930.2 | Barley | cytosol | 77.81 | 77.23 |
| Os01t0837800-01 | Rice | cytosol | 79.05 | 76.39 |
| TraesCS1D01G286000.1 | Wheat | cytosol, peroxisome, plasma membrane | 77.31 | 76.17 |
| TraesCS1A01G287100.1 | Wheat | cytosol, peroxisome, plasma membrane | 77.06 | 75.92 |
| TraesCS1B01G296500.1 | Wheat | cytosol, peroxisome, plasma membrane | 77.06 | 75.74 |
| EES03850 | Sorghum | cytosol, peroxisome, plasma membrane | 77.06 | 75.55 |
| Zm00001d042939_P002 | Maize | cytosol, peroxisome, plasma membrane | 77.06 | 73.4 |
| Os05t0461900-00 | Rice | cytosol | 66.83 | 71.28 |
| CDY20438 | Canola | cytosol | 39.4 | 68.4 |
| GSMUA_Achr5P29180_001 | Banana | plasma membrane | 77.06 | 68.36 |
| Solyc12g017350.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 50.87 | 64.56 |
| CDY20435 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 39.4 | 58.52 |
| Solyc10g005500.2.1 | Tomato | cytosol | 57.36 | 55.83 |
| Solyc03g052990.2.1 | Tomato | cytosol, golgi, peroxisome | 48.63 | 52.7 |
| Solyc01g006150.2.1 | Tomato | cytosol | 49.63 | 49.14 |
| Solyc12g100300.1.1 | Tomato | cytosol | 46.38 | 47.21 |
Protein Annotations
| Gene3D:1.20.1510.10 | MapMan:24.2.9.2.2 | Gene3D:3.30.70.1350 | InterPro:Cation_efflux | InterPro:Cation_efflux_CTD | InterPro:Cation_efflux_CTD_sf |
| InterPro:Cation_efflux_TMD_sf | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006812 |
| GO:GO:0008150 | GO:GO:0008324 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | GO:GO:0071421 |
| GO:GO:0098655 | InterPro:IPR027469 | InterPro:IPR036837 | UniProt:K4C2F0 | PFAM:PF01545 | PFAM:PF16916 |
| PANTHER:PTHR43840 | PANTHER:PTHR43840:SF5 | SUPFAM:SSF160240 | SUPFAM:SSF161111 | EnsemblPlantsGene:Solyc05g054730.2 | EnsemblPlants:Solyc05g054730.2.1 |
| TIGRFAMs:TIGR01297 | TMHMM:TMhelix | UniParc:UPI0002766CBA | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5:+:64584528..64589938
Molecular Weight (calculated)
45279.8 Da
IEP (calculated)
4.754
GRAVY (calculated)
0.081
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MLELVPPDGD HGGECGGEEQ LLLMETNNVD RSWRLNFDEL RLSSENKEKP LPHGLHDCLG VLCQEDNIAV YYQQQVEMLE GFNEMDALAD RGFVPGMSKE
101: EREKLARSET TAIRISNIAN MVLFAAKVYA SVKSGSLAII ASTLDSLLDL LSGFILWFTA FSMQTPNPYQ YPIGKKRMQP LGILVFASVM ATLGLQIILE
201: SMRTLISDES NFSLTKEQER WVIGIMVFVT LVKLVLVLYC RSFTNEIVKA YAQDHFFDVI TNVIGLVAAL LANYFSGWID PVGAMILALY TIRTWSMTVL
301: ENVNSLVGKA AAPEYLQKLT YLCWNHHKAI KHIDTVRAYT FGSHYFVEVD IVLPADMPLQ EAHDIGESLQ EKLELLPEIE RAFVHLDYEY SHKPEHAQAY
401: L
101: EREKLARSET TAIRISNIAN MVLFAAKVYA SVKSGSLAII ASTLDSLLDL LSGFILWFTA FSMQTPNPYQ YPIGKKRMQP LGILVFASVM ATLGLQIILE
201: SMRTLISDES NFSLTKEQER WVIGIMVFVT LVKLVLVLYC RSFTNEIVKA YAQDHFFDVI TNVIGLVAAL LANYFSGWID PVGAMILALY TIRTWSMTVL
301: ENVNSLVGKA AAPEYLQKLT YLCWNHHKAI KHIDTVRAYT FGSHYFVEVD IVLPADMPLQ EAHDIGESLQ EKLELLPEIE RAFVHLDYEY SHKPEHAQAY
401: L
001: MVEPASPDSD EGISLLEFHG NGDRSWQLNF DDFQVSPEHK EKKSPSKLHN CLGCLGPEDN VADYYQQQVE MLEGFTEMDE LAERGFVPGM SKEEQDNLAK
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC
Arabidopsis Description
MTP11MTP11 [Source:UniProtKB/TrEMBL;Acc:A0A178VPD8]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.