Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- vacuole 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr6P16380_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39450.1 | GSMUA_Achr10P... | AT5G51010.1 | 21798944 |
| AT2G39450.1 | GSMUA_Achr6P16380_001 | AT5G51010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20439 | Canola | endoplasmic reticulum, extracellular | 26.84 | 86.18 |
| CDY20436 | Canola | endoplasmic reticulum, extracellular | 26.84 | 86.18 |
| HORVU3Hr1G086970.1 | Barley | cytosol, peroxisome, plasma membrane | 82.28 | 81.45 |
| HORVU1Hr1G071930.2 | Barley | cytosol | 82.53 | 80.69 |
| TraesCS3A01G355500.2 | Wheat | cytosol, peroxisome, plasma membrane | 82.53 | 80.69 |
| TraesCS3B01G388400.1 | Wheat | cytosol, peroxisome, plasma membrane | 82.53 | 80.69 |
| EES03850 | Sorghum | cytosol, peroxisome, plasma membrane | 83.54 | 80.68 |
| TraesCS3D01G349500.1 | Wheat | cytosol, peroxisome, plasma membrane | 82.03 | 80.2 |
| Os01t0837800-01 | Rice | cytosol | 84.05 | 80.0 |
| TraesCS1D01G286000.1 | Wheat | cytosol, peroxisome, plasma membrane | 82.28 | 79.85 |
| TraesCS1A01G287100.1 | Wheat | cytosol, peroxisome, plasma membrane | 82.03 | 79.61 |
| TraesCS1B01G296500.1 | Wheat | cytosol, peroxisome, plasma membrane | 82.03 | 79.41 |
| KRH01581 | Soybean | cytosol | 79.49 | 79.29 |
| KRH70520 | Soybean | cytosol | 78.99 | 78.79 |
| Solyc05g054730.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 79.75 | 78.55 |
| PGSC0003DMT400060460 | Potato | cytosol, peroxisome, plasma membrane | 79.24 | 78.05 |
| Zm00001d042939_P002 | Maize | cytosol, peroxisome, plasma membrane | 83.04 | 77.91 |
| CDY53587 | Canola | cytosol, nucleus, peroxisome | 76.96 | 77.75 |
| Bra005039.1-P | Field mustard | cytosol, nucleus, peroxisome | 71.39 | 77.47 |
| AT2G39450.1 | Thale cress | cytosol, peroxisome, plasma membrane | 77.22 | 77.41 |
| Bra017071.1-P | Field mustard | nucleus | 77.22 | 77.41 |
| VIT_13s0019g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 77.97 | 77.19 |
| GSMUA_Achr5P29180_001 | Banana | plasma membrane | 88.1 | 76.99 |
| CDX93260 | Canola | cytosol | 76.96 | 76.77 |
| CDY07013 | Canola | cytosol | 76.71 | 76.52 |
| Os05t0461900-00 | Rice | cytosol | 70.63 | 74.2 |
| CDY20438 | Canola | cytosol | 38.48 | 65.8 |
| GSMUA_Achr10P... | Banana | extracellular, golgi, mitochondrion | 14.94 | 60.82 |
| GSMUA_Achr10P... | Banana | peroxisome | 56.71 | 59.1 |
| GSMUA_Achr8P18410_001 | Banana | cytosol | 58.23 | 57.07 |
| CDY20435 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 38.99 | 57.04 |
| GSMUA_Achr6P09720_001 | Banana | peroxisome | 56.46 | 56.89 |
| GSMUA_Achr11P... | Banana | golgi, plasma membrane | 30.38 | 51.06 |
| GSMUA_Achr6P11470_001 | Banana | cytosol | 48.61 | 47.17 |
| GSMUA_Achr10P... | Banana | cytosol | 13.67 | 31.4 |
| GSMUA_Achr11P... | Banana | cytosol | 19.75 | 28.68 |
Protein Annotations
| Gene3D:1.20.1510.10 | MapMan:24.2.9.2.2 | Gene3D:3.30.70.1350 | InterPro:Cation_efflux | InterPro:Cation_efflux_CTD | InterPro:Cation_efflux_CTD_sf |
| InterPro:Cation_efflux_TMD_sf | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006812 |
| GO:GO:0008150 | GO:GO:0008324 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | GO:GO:0098655 |
| EnsemblPlantsGene:GSMUA_Achr9G03180_001 | EnsemblPlants:GSMUA_Achr9P03180_001 | EnsemblPlants:GSMUA_Achr9T03180_001 | InterPro:IPR027469 | InterPro:IPR036837 | UniProt:M0TX27 |
| PFAM:PF01545 | PFAM:PF16916 | PANTHER:PTHR43840 | PANTHER:PTHR43840:SF5 | SUPFAM:SSF160240 | SUPFAM:SSF161111 |
| TIGRFAMs:TIGR01297 | TMHMM:TMhelix | UniParc:UPI000294C8E7 | SEG:seg | : | : |
Description
Putative metal tolerance protein C3 [Source:GMGC_GENE;Acc:GSMUA_Achr9G03180_001]
Coordinates
chr9:-:2240218..2244592
Molecular Weight (calculated)
44881.8 Da
IEP (calculated)
4.615
GRAVY (calculated)
-0.092
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEPERAYDE EGTELLLVES GERERSWRLN FDGFRPSEPR EKPPPRGLHD CLGVLGTGDV VAEYYQQQEE MLEGFNEMDA LTDRGFLPGM SKEEREKIAK
101: SETMAIRLSN IANMVLFAAK VYASVRSGSL AIIASTLDSL LDLLSGFILW FTACQMQSRN PYQYPIGKRR MQPLGILVFA SVMATLGLQI ILESVRSLMS
201: DDNEFSLTKE QETWLVDIML SVTLVKLGLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLV AALLANYVED WIDPVGAVIL ALYTIRTWSM TVLENVNSLV
301: GRSAAPEYLQ KLTYLCWNHH KSIRHIDTVR AYTFGSHYFV EVDIVLPSEM PLREAHDIGE ALQEKLEQLA EIERAFVHLD YEFTHKPEHA QSHDD
101: SETMAIRLSN IANMVLFAAK VYASVRSGSL AIIASTLDSL LDLLSGFILW FTACQMQSRN PYQYPIGKRR MQPLGILVFA SVMATLGLQI ILESVRSLMS
201: DDNEFSLTKE QETWLVDIML SVTLVKLGLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLV AALLANYVED WIDPVGAVIL ALYTIRTWSM TVLENVNSLV
301: GRSAAPEYLQ KLTYLCWNHH KSIRHIDTVR AYTFGSHYFV EVDIVLPSEM PLREAHDIGE ALQEKLEQLA EIERAFVHLD YEFTHKPEHA QSHDD
001: MVEPASPDSD EGISLLEFHG NGDRSWQLNF DDFQVSPEHK EKKSPSKLHN CLGCLGPEDN VADYYQQQVE MLEGFTEMDE LAERGFVPGM SKEEQDNLAK
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC
Arabidopsis Description
MTP11MTP11 [Source:UniProtKB/TrEMBL;Acc:A0A178VPD8]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.