Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G215500.1 | |
| TraesCS4B01G100700.1 | |
| TraesCS4D01G097300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39450.1 | TraesCS4A01G215500.1 | AT5G51010.1 | 21798944 |
| AT2G39450.1 | TraesCS4B01G100700.1 | AT5G51010.1 | 21798944 |
| AT2G39450.1 | TraesCS4D01G097300.1 | AT5G51010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G287100.1 | Wheat | cytosol, peroxisome, plasma membrane | 98.53 | 98.77 |
| TraesCS1D01G286000.1 | Wheat | cytosol, peroxisome, plasma membrane | 98.04 | 98.28 |
| HORVU1Hr1G071930.2 | Barley | cytosol | 95.83 | 96.78 |
| CDY20436 | Canola | endoplasmic reticulum, extracellular | 25.74 | 85.37 |
| CDY20439 | Canola | endoplasmic reticulum, extracellular | 25.74 | 85.37 |
| TraesCS3B01G388400.1 | Wheat | cytosol, peroxisome, plasma membrane | 82.84 | 83.66 |
| Os05t0461900-00 | Rice | cytosol | 76.96 | 83.51 |
| GSMUA_Achr9P03180_001 | Banana | cytosol, peroxisome, plasma membrane | 79.41 | 82.03 |
| KRH01581 | Soybean | cytosol | 75.98 | 78.28 |
| CDY53587 | Canola | cytosol, nucleus, peroxisome | 74.75 | 78.01 |
| KRH70520 | Soybean | cytosol | 75.25 | 77.53 |
| Bra005039.1-P | Field mustard | cytosol, nucleus, peroxisome | 69.12 | 77.47 |
| AT2G39450.1 | Thale cress | cytosol, peroxisome, plasma membrane | 74.75 | 77.41 |
| Bra017071.1-P | Field mustard | nucleus | 74.51 | 77.16 |
| Solyc05g054730.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 75.74 | 77.06 |
| CDY07013 | Canola | cytosol | 74.75 | 77.02 |
| CDX93260 | Canola | cytosol | 74.75 | 77.02 |
| PGSC0003DMT400060460 | Potato | cytosol, peroxisome, plasma membrane | 75.25 | 76.56 |
| VIT_13s0019g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 73.53 | 75.19 |
| GSMUA_Achr5P29180_001 | Banana | plasma membrane | 77.7 | 70.13 |
| CDY20438 | Canola | cytosol | 37.5 | 66.23 |
| CDY20435 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 37.99 | 57.41 |
| TraesCS3B01G040900.3 | Wheat | cytosol, peroxisome, plasma membrane | 54.41 | 56.49 |
| TraesCS4B01G233300.1 | Wheat | cytosol, peroxisome, plasma membrane | 47.3 | 48.25 |
| TraesCS6B01G353300.1 | Wheat | cytosol | 47.3 | 47.07 |
Protein Annotations
| Gene3D:1.20.1510.10 | MapMan:24.2.9.2.2 | Gene3D:3.30.70.1350 | InterPro:Cation_efflux | InterPro:Cation_efflux_CTD | InterPro:Cation_efflux_CTD_sf |
| InterPro:Cation_efflux_TMD_sf | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006812 |
| GO:GO:0008150 | GO:GO:0008324 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR027469 |
| InterPro:IPR036837 | PFAM:PF01545 | PFAM:PF16916 | PANTHER:PTHR43840 | PANTHER:PTHR43840:SF14 | SUPFAM:SSF160240 |
| SUPFAM:SSF161111 | TIGRFAMs:TIGR01297 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS1B01G296500 | EnsemblPlants:TraesCS1B01G296500.1 | SEG:seg |
Description
No Description!
Coordinates
chr1B:+:515448087..515451225
Molecular Weight (calculated)
45695.9 Da
IEP (calculated)
4.603
GRAVY (calculated)
0.030
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGGSGEQG EELFLLRSAE EGEGDGDGLC VGERPWRLNF DGFRRQGPQQ ENPPSRGLQD CLGVLAQGPG DVVAEYYQQQ LEMLEGFDEM DTLTDRGCLP
101: GISKEEREKI AQSETLAIRL SNIANMVLFA AKVYASIRSG SLAIIASTLD SLLDLLSGFI LWFTAFSMQT PNPYRYPIGK RRMQPLGILV FASVMATLGL
201: QIILESTRSL VSSNGAEFRL TKEQEMWVVN IMLAVTLVKL LLVIYCRSFT NEIVKAYAQD HFFDVITNII GLVAALLANY FEGWIDPVGA IILAIYTIRT
301: WSMTVLENVH SLVGQSASPE FLQKLTYLCW NHHKAVRHID TVRAYTFGSH YFVEVDIVLP CDMPLQEAHD IGEALQEKLE SLPEIERAFV HLDYEFTHQP
401: EHARSYDT
101: GISKEEREKI AQSETLAIRL SNIANMVLFA AKVYASIRSG SLAIIASTLD SLLDLLSGFI LWFTAFSMQT PNPYRYPIGK RRMQPLGILV FASVMATLGL
201: QIILESTRSL VSSNGAEFRL TKEQEMWVVN IMLAVTLVKL LLVIYCRSFT NEIVKAYAQD HFFDVITNII GLVAALLANY FEGWIDPVGA IILAIYTIRT
301: WSMTVLENVH SLVGQSASPE FLQKLTYLCW NHHKAVRHID TVRAYTFGSH YFVEVDIVLP CDMPLQEAHD IGEALQEKLE SLPEIERAFV HLDYEFTHQP
401: EHARSYDT
001: MVEPASPDSD EGISLLEFHG NGDRSWQLNF DDFQVSPEHK EKKSPSKLHN CLGCLGPEDN VADYYQQQVE MLEGFTEMDE LAERGFVPGM SKEEQDNLAK
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC
Arabidopsis Description
MTP11MTP11 [Source:UniProtKB/TrEMBL;Acc:A0A178VPD8]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.