Factsheet for TraesCS3B01G040900.3

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G038000.3	Wheat	cytosol	97.2	97.45
TraesCS3A01G042600.1	Wheat	cytosol, peroxisome, plasma membrane	95.67	96.16
Os01t0130000-01	Rice	cytosol	83.97	84.4
Zm00001d040002_P001	Maize	cytosol, peroxisome, plasma membrane	82.7	82.49
KXG31976	Sorghum	cytosol	82.19	81.77
CDY51006	Canola	golgi, plasma membrane	40.97	73.85
GSMUA_Achr10P...	Banana	peroxisome	70.23	72.82
GSMUA_Achr6P09720_001	Banana	peroxisome	69.72	69.9
Solyc12g017350.1.1	Tomato	cytosol, peroxisome, plasma membrane	55.73	69.3
GSMUA_Achr8P18410_001	Banana	cytosol	70.48	68.73
CDX81760	Canola	plasma membrane	62.85	65.0
CDY35081	Canola	cytosol, peroxisome, plasma membrane, plastid	65.9	64.75
CDY33342	Canola	cytosol, peroxisome, plasma membrane, plastid	65.9	64.75
Bra026067.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	65.9	64.75
KRH13763	Soybean	cytosol, peroxisome, plasma membrane	65.14	64.48
Bra026723.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	65.65	64.34
CDX88546	Canola	cytosol	65.65	64.18
VIT_18s0041g00090.t01	Wine grape	peroxisome	63.87	64.03
CDX87376	Canola	cytosol	65.39	63.93
KRH13762	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	64.38	63.89
KRH43692	Soybean	cytosol, peroxisome, plasma membrane	64.12	63.64
CDY61375	Canola	golgi	34.61	63.55
AT1G79520.2	Thale cress	peroxisome	65.39	62.08
VIT_19s0085g00650.t01	Wine grape	cytosol, peroxisome, plasma membrane	61.83	60.75
Solyc10g005500.2.1	Tomato	cytosol	63.61	60.68
KRH37933	Soybean	cytosol	62.85	60.24
AT1G16310.1	Thale cress	plasma membrane	65.39	60.05
KRH38261	Soybean	cytosol, peroxisome, plasma membrane	60.81	59.75
KRH43691	Soybean	cytosol	48.09	58.88
PGSC0003DMT400029243	Potato	cytosol, peroxisome, plasma membrane	64.38	56.35
TraesCS3B01G388400.1	Wheat	cytosol, peroxisome, plasma membrane	57.0	55.45
TraesCS1B01G296500.1	Wheat	cytosol, peroxisome, plasma membrane	56.49	54.41
PGSC0003DMT400024996	Potato	cytosol, peroxisome, plasma membrane, plastid	48.35	53.98
KRG98101	Soybean	cytosol	7.38	50.0
TraesCS4B01G233300.1	Wheat	cytosol, peroxisome, plasma membrane	46.31	45.5
TraesCS6B01G353300.1	Wheat	cytosol	46.06	44.15
Bra035123.1-P	Field mustard	cytosol, peroxisome, plasma membrane	64.63	42.12
CDX88395	Canola	endoplasmic reticulum, extracellular	12.98	37.23

Protein Annotations

Gene3D:1.20.1510.10	MapMan:24.2.9.2.2	Gene3D:3.30.70.1350	InterPro:Cation_efflux	InterPro:Cation_efflux_CTD	InterPro:Cation_efflux_CTD_sf
InterPro:Cation_efflux_TMD_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812
GO:GO:0008150	GO:GO:0008324	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR027469
InterPro:IPR036837	PFAM:PF01545	PFAM:PF16916	PANTHER:PTHR43840	PANTHER:PTHR43840:SF2	SUPFAM:SSF160240
SUPFAM:SSF161111	TIGRFAMs:TIGR01297	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3B01G040900	EnsemblPlants:TraesCS3B01G040900.3	SEG:seg

Description

No Description!

Coordinates

chr3B:+:20354405..20358512

Molecular Weight (calculated)

44613.9 Da

IEP (calculated)

6.578

GRAVY (calculated)

-0.068

Length

393 amino acids

Sequence
(BLAST)

001: MATAGGREEG EPEPPAESWR LRMGSSDALR APERLHRRPP FFSRLFGAAC PSHGKQRKIA KYYEKQESLL KDFSEMESMN ELGCLDQNSA PTEEELRQLA
101: KGERLAINLS NVINLVLFVG KVVASFETRS MAVIASTLDS LLDLLSGFIL WFTAHAMKKP NKYSYPIGKR RMQPVGIVVF ASVMGCLGFQ VLIESGRELV
201: TQEHTTFDTW KEMWMVGSMS SVAVVKFFLM LYCRTFKNEI VRAYAQDHFF DVITNSVGLV SALLAVKFKW WMDPVGAILI ALYTITTWAR TVLENVGTLI
301: GRSAPAEYLT KLTYLIWNHH EEIRHIDTVR AYTFGTHYFV EVDVVLPGDM PLSQAHDIGE ALQEKLEQLP EVERAFVHVD FEFTHRPEHK ADV

Best Arabidopsis Sequence Match ( AT1G79520.3 )
(BLAST)

001: MGFTLFCCEK SEKERKVSEY YKQQEKLLEG FNEMETINET GFVSGAPTEE ELKKLAKSER LAVHISNAAN LVLFVAKVYA SVESRSMAVI ASTLDSLLDL
101: LSGFILWFTA NAMRTPNNFR YPIGKRRMQP VGIIVFASVM ATLGLQVILE STRLLVSKNG SHMSSTEEKW MIGIMASATV VKFLLMLYCR SFQNEIVRAY
201: AQDHLFDVIT NSVGLATAVL AVKFYWWIDP SGAILIALYT ISTWARTVLE NVHSLIGRSA PPDFLAKLTF LIWNHHEKIK HIDTVRAYTF GSHYFVEVDI
301: VLPEDMRLHE AHNIGETLQE KLEQLSEVER AFVHIDFEFT HRPEHKCKV

Arabidopsis Description

Cation efflux family protein [Source:UniProtKB/TrEMBL;Acc:F4IF62]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.