Factsheet for VIT_18s0041g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 2
plasma membrane 2
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51006	Canola	golgi, plasma membrane	45.15	81.19
KRH13762	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	75.26	74.49
KRH43692	Soybean	cytosol, peroxisome, plasma membrane	74.74	73.99
KRH13763	Soybean	cytosol, peroxisome, plasma membrane	74.74	73.8
Solyc10g005500.2.1	Tomato	cytosol	75.51	71.84
VIT_19s0085g00650.t01	Wine grape	cytosol, peroxisome, plasma membrane	71.94	70.5
Bra026067.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	71.94	70.5
CDY35081	Canola	cytosol, peroxisome, plasma membrane, plastid	71.94	70.5
CDY33342	Canola	cytosol, peroxisome, plasma membrane, plastid	71.68	70.25
CDX81760	Canola	plasma membrane	67.86	70.0
KRH37933	Soybean	cytosol	72.7	69.51
Bra026723.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	70.92	69.33
CDX87376	Canola	cytosol	70.41	68.66
CDX88546	Canola	cytosol	70.41	68.66
GSMUA_Achr10P...	Banana	peroxisome	66.33	68.6
AT1G79520.2	Thale cress	peroxisome	71.68	67.87
CDY61375	Canola	golgi	36.22	66.36
GSMUA_Achr8P18410_001	Banana	cytosol	67.86	66.0
PGSC0003DMT400029243	Potato	cytosol, peroxisome, plasma membrane	75.51	65.92
KRH43691	Soybean	cytosol	53.57	65.42
AT1G16310.1	Thale cress	plasma membrane	71.43	65.42
GSMUA_Achr6P09720_001	Banana	peroxisome	65.31	65.31
Os01t0130000-01	Rice	cytosol	64.29	64.45
TraesCS3D01G038000.3	Wheat	cytosol	64.03	64.03
TraesCS3B01G040900.3	Wheat	cytosol, peroxisome, plasma membrane	64.03	63.87
TraesCS3A01G042600.1	Wheat	cytosol, peroxisome, plasma membrane	62.76	62.92
Zm00001d040002_P001	Maize	cytosol, peroxisome, plasma membrane	63.01	62.69
KXG31976	Sorghum	cytosol	62.24	61.77
VIT_13s0019g00020.t01	Wine grape	cytosol, peroxisome, plasma membrane	59.44	58.4
VIT_08s0007g06760.t01	Wine grape	cytosol, peroxisome, plasma membrane	48.72	47.39
VIT_06s0004g01110.t01	Wine grape	plastid	49.23	46.39
Bra035123.1-P	Field mustard	cytosol, peroxisome, plasma membrane	69.64	45.27
CDX88395	Canola	endoplasmic reticulum, extracellular	14.29	40.88

Protein Annotations

Gene3D:1.20.1510.10	EntrezGene:100853409	wikigene:100853409	MapMan:24.2.9.2.2	Gene3D:3.30.70.1350	EMBL:AM428732
ProteinID:CAN64642	ProteinID:CAN64642.1	ProteinID:CBI39365	ProteinID:CBI39365.3	InterPro:Cation_efflux	InterPro:Cation_efflux_CTD
InterPro:Cation_efflux_CTD_sf	InterPro:Cation_efflux_TMD_sf	UniProt:D7U9F1	EMBL:FN596744	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	GO:GO:0098655	InterPro:IPR027469	InterPro:IPR036837	EntrezGene:LOC100853409
wikigene:LOC100853409	PFAM:PF01545	PFAM:PF16916	PANTHER:PTHR43840	PANTHER:PTHR43840:SF2	SUPFAM:SSF160240
SUPFAM:SSF161111	TIGRFAMs:TIGR01297	TMHMM:TMhelix	UniParc:UPI0001BE502D	ArrayExpress:VIT_18s0041g00090	EnsemblPlantsGene:VIT_18s0041g00090
EnsemblPlants:VIT_18s0041g00090.t01	RefSeq:XP_003634572	RefSeq:XP_003634572.1	RefSeq:XP_003634572.2	:	:

Description

No Description!

Coordinates

chr18:+:24385916..24389459

Molecular Weight (calculated)

45184.0 Da

IEP (calculated)

8.565

GRAVY (calculated)

-0.108

Length

392 amino acids

Sequence
(BLAST)

001: MKSETGEDYR TELLHQARPE AKSWRLNLRE FRLPERRSAD PPFSLKGLLH HMTPRKKGKV AEYYKKQERL LEAYNEMETI NSMGCLPGRL TEDELKQLEM
101: NERMAIYASN IANLVLFTAK VYASFESRSL AVIASTLDSF LDLLSGFILW FTAHAMRTPN QYRYPIGKKR MQPVGIIVFA SVMATLGLQI LLESVRQLIS
201: GSRSKMDGEK EKWMIGIMVS VTVVKFVLMV YCRRFKNEIV SAYAKDHFFD VITNSIGLAT AVLAVHFYWW IDPVGALIIA GYTIGTWAKT VIENVWSLIG
301: RSAPPDFLAK LTYLIWNHHE DIKHIDTVRA YTFGSHYFVE VDIVLPEDMF LGRAHNIGET LQEKLEQLPE VERAFVHIDF EFTHRPEHKT KV

Best Arabidopsis Sequence Match ( AT1G16310.1 )
(BLAST)

001: MPLNSYIFFL FLTTSPRNTF FGIRTHSDRI MATEHITRTG DEYNVELLPS DDDAPPLESS WRLNLDAFQL PSSTGGRHDG RTRFSRYFRT PRKERRVSEY
101: YKKQERLLEG FNEMETIHEN GFASGVPTEE EMKKLAKSER LAVHISNATN LVLFVAKVYA SMESRSMAVI ASTLDSLLDL LSGFILWFTA NAMRKPNQFH
201: YPIGKRRMQP VGIIVFASVM ATLGLQVLLE SGRQLVAKSG IHMNSTEEKW MIGIMVSVTI VKFLLMLYCR GFQNEIVRAY AQDHLFDVVT NSIGLATAVL
301: AVKFYWWIDP TGAILIALYT IATWARTVLE NVHSLIGRSA PPDFLAKLTF LIWNHHEQIK HIDTVRAYTF GSHYFVEVDI VLPEDMRLQE AHNIGETLQE
401: KLEQLAEVER AFVHIDFEFT HRPEHKCN

Arabidopsis Description

MTP10Metal tolerance protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q0WU02]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.