Factsheet for VIT_06s0004g01110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98100	Soybean	plasma membrane	58.65	82.99
GSMUA_Achr10P...	Banana	extracellular, golgi, mitochondrion	19.23	82.47
TraesCS4B01G233300.1	Wheat	cytosol, peroxisome, plasma membrane	73.8	76.75
TraesCS4D01G234400.1	Wheat	cytosol, peroxisome, plasma membrane	73.8	76.75
EER92593	Sorghum	cytosol, peroxisome, plasma membrane	73.56	76.69
TraesCS4A01G077100.1	Wheat	cytosol, peroxisome, plasma membrane	73.8	76.56
Zm00001d028344_P002	Maize	cytosol, peroxisome, plasma membrane	73.8	76.37
Os03t0226400-01	Rice	vacuole	72.84	76.32
Solyc01g006150.2.1	Tomato	cytosol	74.28	76.3
PGSC0003DMT400081988	Potato	cytosol	74.04	76.05
GSMUA_Achr11P...	Banana	golgi, plasma membrane	42.31	74.89
GSMUA_Achr6P11470_001	Banana	cytosol	73.08	74.69
PGSC0003DMT400010945	Potato	cytosol	73.8	74.15
Solyc12g100300.1.1	Tomato	cytosol	70.19	74.11
VIT_08s0007g06760.t01	Wine grape	cytosol, peroxisome, plasma membrane	70.43	72.7
Os02t0775100-01	Rice	plasma membrane	35.34	72.06
CDX71976	Canola	cytosol, peroxisome, plasma membrane	68.75	69.76
CDY06055	Canola	cytosol, peroxisome, plasma membrane	68.51	69.51
Bra007377.1-P	Field mustard	cytosol, peroxisome, plasma membrane	68.51	69.51
AT3G58060.1	Thale cress	cytosol, peroxisome, plasma membrane	68.51	69.34
KRH17220	Soybean	cytosol, peroxisome, plasma membrane	65.14	69.13
CDY67929	Canola	cytosol	67.07	68.89
CDX88969	Canola	cytosol, peroxisome, plasma membrane	67.07	68.89
Bra014588.1-P	Field mustard	cytosol, peroxisome, plasma membrane	67.07	68.89
TraesCS6B01G353300.1	Wheat	cytosol	65.87	66.83
CDY56242	Canola	cytosol, peroxisome, plasma membrane	65.62	66.59
Bra003316.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.38	66.34
CDY57242	Canola	cytosol	65.38	66.34
TraesCS6A01G322500.1	Wheat	cytosol	65.14	66.1
HORVU4Hr1G065110.3	Barley	cytosol, peroxisome	73.8	65.46
KXG31199	Sorghum	peroxisome	66.35	63.59
TraesCS6D01G302400.1	Wheat	cytosol	65.38	60.44
KRH72855	Soybean	cytosol, endoplasmic reticulum, peroxisome	61.54	60.09
Zm00001d018242_P001	Maize	cytosol	65.38	60.04
GSMUA_Achr10P...	Banana	cytosol	24.76	59.88
HORVU6Hr1G078910.2	Barley	cytosol	56.73	55.27
GSMUA_Achr11P...	Banana	cytosol	33.65	51.47
VIT_13s0019g00020.t01	Wine grape	cytosol, peroxisome, plasma membrane	48.56	50.63
VIT_18s0041g00090.t01	Wine grape	peroxisome	46.39	49.23
VIT_19s0085g00650.t01	Wine grape	cytosol, peroxisome, plasma membrane	45.67	47.5

Protein Annotations

Gene3D:1.20.1510.10	EntrezGene:100262068	wikigene:100262068	MapMan:24.2.9.2.2	Gene3D:3.30.70.1350	ProteinID:CBI16474
ProteinID:CBI16474.3	InterPro:Cation_efflux	InterPro:Cation_efflux_CTD	InterPro:Cation_efflux_CTD_sf	InterPro:Cation_efflux_TMD_sf	ncoils:Coil
UniProt:D7SLE6	EMBL:FN594951	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
GO:GO:0098655	InterPro:IPR027469	InterPro:IPR036837	EntrezGene:LOC100262068	wikigene:LOC100262068	PFAM:PF01545
PFAM:PF16916	PANTHER:PTHR43840	PANTHER:PTHR43840:SF3	SUPFAM:SSF160240	SUPFAM:SSF161111	TIGRFAMs:TIGR01297
TMHMM:TMhelix	UniParc:UPI000198374D	ArrayExpress:VIT_06s0004g01110	EnsemblPlantsGene:VIT_06s0004g01110	EnsemblPlants:VIT_06s0004g01110.t01	unigene:Vvi.931
RefSeq:XP_002285662	RefSeq:XP_002285662.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:1206783..1210849

Molecular Weight (calculated)

47076.5 Da

IEP (calculated)

5.341

GRAVY (calculated)

-0.094

Length

416 amino acids

Sequence
(BLAST)

001: MDGDSGSEPK SPLLSKSDGW RFSESRRRGR LSRRNSSNSL RNEFVSRLPE KIRSGIDVES PSHLDLSKSK GLSEGEKEYY ERQWATLKSF EEVDSLMTSN
101: YIDEEDLVEQ AEQAEQAQQE MAMRISNYAN VVLLAFKIYA TIKSGSIAIA ASTLDSLLDL MAGGILWFTH LSMKNINIYQ YPIGKLRVQP VGIIIFAAIM
201: ATLGFQILIE AVEELVKDKA SDKMSSDQLI WLYTIMLSAT AVKLALWLYC RTSRNKIVRA YANDHYFDVI TNVVGLVAAV LGDKFYWWID PVGAIFLAVY
301: TITNWSQTVL ENAVSLVGQS AAPEVLQKLT YLVIRHPQVK RIDTVRAYTF GVLYFVEVDI ELPEDLPLKE AHTIGETLQI KIERLPEVER AFVHLDFECD
401: HKPEHSILSR LPNSQP

Best Arabidopsis Sequence Match ( AT3G58060.1 )
(BLAST)

001: MEVNYCPETP LLSSNDHEAI DHKPKLTGMV SSMKSNFFAD LPQKLRSKID PENPLHLDVS KAAGLKEDEK EYYERQLATL KSFEEVESFL ARSDEYTIDE
101: KEEEEDRAER AAQELAMQIS NWANIFLLAL KIYATVKSGS IAIAASTLDS LLDLMAGGIL WFTHLSMKNV NIYKYPIGKL RVQPVGIIIF AAVMATLGFQ
201: VLLVAAEQLI SNEPSEKMNH VQLIWLYSIM LSATAIKLVL WIYCKSSRNH IVRAYAKDHH FDVVTNVLGL VAAVLANAFY WWLDPTGAIL LAIYTIVNWS
301: GTVMENAVSL IGQSAPPEVL QKLTYLVMRQ GGDNIKHVDT VRAYTFGVLY FVEVDIELPE DLPLKEAHAI GESLQIKLEE LPEVERAFVH LDFECHHKPE
401: HSVLSTIPND L

Arabidopsis Description

MTPC3Cation efflux family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VEZ3]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.