Factsheet for VIT_13s0019g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
vacuole 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g00110.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39450.1	VIT_17s0000g00110.t01	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20439	Canola	endoplasmic reticulum, extracellular	27.32	88.62
CDY20436	Canola	endoplasmic reticulum, extracellular	27.32	88.62
KRH70520	Soybean	cytosol	83.46	84.09
KRH01581	Soybean	cytosol	83.46	84.09
Solyc05g054730.2.1	Tomato	cytosol, peroxisome, plasma membrane	83.21	82.79
CDY53587	Canola	cytosol, nucleus, peroxisome	80.7	82.35
Bra005039.1-P	Field mustard	cytosol, nucleus, peroxisome	74.94	82.14
PGSC0003DMT400060460	Potato	cytosol, peroxisome, plasma membrane	82.46	82.04
AT2G39450.1	Thale cress	cytosol, peroxisome, plasma membrane	80.7	81.73
CDX93260	Canola	cytosol	79.2	79.8
Bra017071.1-P	Field mustard	nucleus	78.7	79.7
CDY07013	Canola	cytosol	78.95	79.55
GSMUA_Achr9P03180_001	Banana	cytosol, peroxisome, plasma membrane	77.19	77.97
HORVU3Hr1G086970.1	Barley	cytosol, peroxisome, plasma membrane	75.94	75.94
TraesCS3B01G388400.1	Wheat	cytosol, peroxisome, plasma membrane	76.44	75.5
TraesCS3A01G355500.2	Wheat	cytosol, peroxisome, plasma membrane	76.19	75.25
TraesCS3D01G349500.1	Wheat	cytosol, peroxisome, plasma membrane	75.94	75.0
HORVU1Hr1G071930.2	Barley	cytosol	75.69	74.75
EES03850	Sorghum	cytosol, peroxisome, plasma membrane	76.44	74.57
TraesCS1A01G287100.1	Wheat	cytosol, peroxisome, plasma membrane	75.69	74.2
Os01t0837800-01	Rice	cytosol	76.94	73.98
TraesCS1D01G286000.1	Wheat	cytosol, peroxisome, plasma membrane	75.44	73.96
TraesCS1B01G296500.1	Wheat	cytosol, peroxisome, plasma membrane	75.19	73.53
Zm00001d042939_P002	Maize	cytosol, peroxisome, plasma membrane	76.19	72.21
Os05t0461900-00	Rice	cytosol	65.91	69.95
CDY20438	Canola	cytosol	40.1	69.26
GSMUA_Achr5P29180_001	Banana	plasma membrane	75.69	66.81
CDY20435	Canola	cytosol, mitochondrion, nucleus, peroxisome	40.35	59.63
VIT_18s0041g00090.t01	Wine grape	peroxisome	58.4	59.44
VIT_19s0085g00650.t01	Wine grape	cytosol, peroxisome, plasma membrane	58.4	58.25
VIT_06s0004g01110.t01	Wine grape	plastid	50.63	48.56
VIT_08s0007g06760.t01	Wine grape	cytosol, peroxisome, plasma membrane	48.12	47.64

Protein Annotations

Gene3D:1.20.1510.10	EntrezGene:100256956	wikigene:100256956	MapMan:24.2.9.2.2	Gene3D:3.30.70.1350	ProteinID:CBI31746
ProteinID:CBI31746.3	InterPro:Cation_efflux	InterPro:Cation_efflux_CTD	InterPro:Cation_efflux_CTD_sf	InterPro:Cation_efflux_TMD_sf	UniProt:D7TM09
EMBL:FN595998	GO:GO:0003674	GO:GO:0005215	GO:GO:0005384	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005770	GO:GO:0005794	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0009987	GO:GO:0010042	GO:GO:0010486
GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0030026	GO:GO:0046688	GO:GO:0055085
GO:GO:0071421	GO:GO:0098655	InterPro:IPR027469	InterPro:IPR036837	EntrezGene:LOC100256956	wikigene:LOC100256956
PFAM:PF01545	PFAM:PF16916	PANTHER:PTHR43840	PANTHER:PTHR43840:SF5	SUPFAM:SSF160240	SUPFAM:SSF161111
TIGR:TC65032	TIGRFAMs:TIGR01297	TMHMM:TMhelix	UniParc:UPI00019847AF	ArrayExpress:VIT_13s0019g00020	EnsemblPlantsGene:VIT_13s0019g00020
EnsemblPlants:VIT_13s0019g00020.t01	unigene:Vvi.3540	RefSeq:XP_002282508	RefSeq:XP_002282508.1	SEG:seg	:

Description

No Description!

Coordinates

chr13:-:2241936..2246134

Molecular Weight (calculated)

45128.4 Da

IEP (calculated)

4.656

GRAVY (calculated)

0.031

Length

399 amino acids

Sequence
(BLAST)

001: MVEPVILDGD LDGSEELLLR PTPKNGDRSW RLNFDGFQLS EHKEKKPPRS LHDCLGVLAP GPEDDVAEYY QQQVEMLEGF NEMDALAEHG YIPRMTEEER
101: EKLARSETTA IRISNIANMI LFAAKVYASV MSGSLAIIAS TLDSLLDLLS GFILWFTAFS MQTPNPYQYP IGKKRMQPLG ILVFASVMAT LGLQIILESV
201: RTLSSDEAEF DLTREQEQWV IGIMLSVTLT KLILAVYCRA FTNEIVKAYA QDHFFDVITN IIGLIAVLLA NYISDWMDPV GAIILALYTI RTWTLTVLEN
301: VNSLVGRTAA PEYLQKLTYL CWNHHKAIRH IDTVRAYTFG SHYFVEVDIV LPANMPLQEA HDIGESLQVK LELLPEIERA FVHLDYEYSH KPEHAQTSS

Best Arabidopsis Sequence Match ( AT2G39450.1 )
(BLAST)

001: MVEPASPDSD EGISLLEFHG NGDRSWQLNF DDFQVSPEHK EKKSPSKLHN CLGCLGPEDN VADYYQQQVE MLEGFTEMDE LAERGFVPGM SKEEQDNLAK
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC

Arabidopsis Description

MTP11MTP11 [Source:UniProtKB/TrEMBL;Acc:A0A178VPD8]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.