Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- extracellular 1
- mitochondrion 2
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_04s0023g02110.t01 | |
| VIT_10s0003g01830.t01 | |
| VIT_14s0060g02090.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G51010.1 | VIT_04s0023g02110.t01 | AT3G50910.1 | 21798944 |
| AT5G51010.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
| AT5G51010.1 | VIT_14s0060g02090.t01 | AT5G27690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH59722 | Soybean | nucleus | 67.9 | 71.43 |
| KRH41049 | Soybean | nucleus, plastid | 67.28 | 69.43 |
| Solyc03g118130.2.1 | Tomato | plastid | 66.67 | 68.35 |
| PGSC0003DMT400036930 | Potato | plastid | 66.67 | 67.5 |
| GSMUA_Achr10P... | Banana | plastid | 67.9 | 65.09 |
| KRH63883 | Soybean | plastid | 65.43 | 64.24 |
| Zm00001d007394_P001 | Maize | plastid | 58.02 | 63.95 |
| EES09846 | Sorghum | plastid | 58.02 | 62.25 |
| Os11t0528500-01 | Rice | plastid | 57.41 | 61.59 |
| AT5G51010.1 | Thale cress | plastid | 56.79 | 59.74 |
| KRH54078 | Soybean | plastid | 52.47 | 59.03 |
| CDX84893 | Canola | plastid | 55.56 | 57.32 |
| Bra022748.1-P | Field mustard | plastid | 55.56 | 57.32 |
| TraesCS4B01G100700.1 | Wheat | plastid | 52.47 | 55.56 |
| TraesCS4D01G097300.1 | Wheat | plastid | 52.47 | 55.56 |
| CDY45796 | Canola | plastid | 53.7 | 53.7 |
| TraesCS4A01G215500.1 | Wheat | plastid | 51.23 | 53.55 |
| HORVU4Hr1G043650.2 | Barley | plastid | 54.94 | 35.32 |
| GSMUA_Achr6P16380_001 | Banana | vacuole | 35.19 | 32.39 |
Protein Annotations
| EntrezGene:100259528 | wikigene:100259528 | Gene3D:2.20.28.10 | MapMan:35.2 | ProteinID:CCB43369 | ProteinID:CCB43369.1 |
| UniProt:F6GT48 | EMBL:FN594950 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR024934 | EntrezGene:LOC100259528 | wikigene:LOC100259528 | PFAM:PF00301 |
| PFscan:PS50903 | PANTHER:PTHR45299 | InterPro:Rubredoxin-like_dom | InterPro:Rubredoxin_dom | SUPFAM:SSF57802 | TIGR:TC54713 |
| TMHMM:TMhelix | UniParc:UPI00015C951A | ArrayExpress:VIT_17s0000g00110 | EnsemblPlantsGene:VIT_17s0000g00110 | EnsemblPlants:VIT_17s0000g00110.t01 | RefSeq:XP_002284699 |
| RefSeq:XP_002284699.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr17:-:44685..46587
Molecular Weight (calculated)
17953.0 Da
IEP (calculated)
10.488
GRAVY (calculated)
-0.208
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MALPSPTRLE ATKSCPLAPT GNVGLRRPMD RFALRSSFFS PSIHLLLPPN QHRALPSTAP KISMRVASKQ AYICRDCGYI YNDRTPFEKL PDGYFCPVCG
101: APKRRFRPYQ PAVAKNANDM DVRKARKTQI QKDEAIGRAL PIAIVVGIAA LAGLYFYLNS TV
101: APKRRFRPYQ PAVAKNANDM DVRKARKTQI QKDEAIGRAL PIAIVVGIAA LAGLYFYLNS TV
001: MAMQLPPTTL YAGRSSVVLP PTTPTLQRSS FLPYYSMRLL GNKKSLSKSS APRFSMRVSS KQAYICRDCG YIYNDRTPFD KLPDNYFCPV CAAPKRRFRA
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS
Arabidopsis Description
Rubredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FI47]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.