CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
extracellular 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08190
KRH11076
KRH21197
KRH28715
KRH33893
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036
KRH68524
KRH69884
KRH76747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51010.1	KRH08190	AT3G50910.1	21798944
AT5G51010.1	KRH28715	AT3G50910.1	21798944
AT5G51010.1	KRH69884	AT3G50910.1	21798944
AT5G51010.1	KRH76747	AT3G50910.1	21798944
AT5G51010.1	KRH11076	AT4G19030.1	21798944
AT5G51010.1	KRH21197	AT4G19030.1	21798944
AT5G51010.1	KRH42923	AT4G19030.1	21798944
AT5G51010.1	KRH42926	AT4G19030.1	21798944
AT5G51010.1	KRH45251	AT4G19030.1	21798944
AT5G51010.1	KRH59035	AT4G19030.1	21798944
AT5G51010.1	KRH59036	AT4G19030.1	21798944
AT5G51010.1	KRH33893	AT5G27690.1	21798944
AT5G51010.1	KRH68524	AT5G27690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54078	Soybean	plastid	77.58	88.89
KRH59722	Soybean	nucleus	65.45	70.13
KRH41049	Soybean	nucleus, plastid	64.85	68.15
VIT_17s0000g00110.t01	Wine grape	plastid	64.24	65.43
GSMUA_Achr10P...	Banana	plastid	63.03	61.54
Zm00001d007394_P001	Maize	plastid	53.94	60.54
EES09846	Sorghum	plastid	54.55	59.6
Solyc03g118130.2.1	Tomato	plastid	56.36	58.86
Os11t0528500-01	Rice	plastid	52.12	56.95
PGSC0003DMT400036930	Potato	plastid	55.15	56.88
AT5G51010.1	Thale cress	plastid	52.12	55.84
CDY45796	Canola	plastid	52.73	53.7
CDX84893	Canola	plastid	50.3	52.87
Bra022748.1-P	Field mustard	plastid	50.3	52.87
TraesCS4B01G100700.1	Wheat	plastid	48.48	52.29
TraesCS4D01G097300.1	Wheat	plastid	48.48	52.29
TraesCS4A01G215500.1	Wheat	plastid	49.09	52.26
HORVU4Hr1G043650.2	Barley	plastid	47.27	30.95
GSMUA_Achr6P16380_001	Banana	vacuole	32.12	30.11

Protein Annotations

EMBL:ACUP02002722	EnsemblPlants:KRH63883	EnsemblPlantsGene:GLYMA_04G202300	Gene3D:2.20.28.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR024934	InterPro:Rubredoxin-like_dom
InterPro:Rubredoxin_dom	PANTHER:PTHR45299	PFscan:PS50903	ProteinID:KRH63883	ProteinID:KRH63883.1	SEG:seg
SUPFAM:SSF57802	TMHMM:TMhelix	UniParc:UPI00023BF42B	UniProt:I1JXR9	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr4:+:47511464..47513147

Molecular Weight (calculated)

18172.2 Da

IEP (calculated)

10.527

GRAVY (calculated)

-0.143

Length

165 amino acids

Sequence
(BLAST)

001: MAMHMQAPTI SLNTARSPSS LAPAANAGLR PHLNPLALKS SFFSGSLNLL LHPMQQYLTS GAPRISMRVA SKQAYICRDC GYIYNDRIPF EKLPDKFFCP
101: VCGAPKRRFR PYAPTVARNA NDKDVRKARK SEIKKEEAIG NALPIAAAVG IAVLAGIYFY LNNKF

Best Arabidopsis Sequence Match ( AT5G51010.1 )
(BLAST)

001: MAMQLPPTTL YAGRSSVVLP PTTPTLQRSS FLPYYSMRLL GNKKSLSKSS APRFSMRVSS KQAYICRDCG YIYNDRTPFD KLPDNYFCPV CAAPKRRFRA
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS

Arabidopsis Description

Rubredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FI47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.