Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G097300.1 | Wheat | plastid | 50.4 | 83.01 |
| TraesCS4B01G100700.1 | Wheat | plastid | 49.21 | 81.05 |
| TraesCS4A01G215500.1 | Wheat | plastid | 49.6 | 80.65 |
| Os11t0528500-01 | Rice | plastid | 40.48 | 67.55 |
| Zm00001d007394_P001 | Maize | plastid | 37.3 | 63.95 |
| EES09846 | Sorghum | plastid | 37.3 | 62.25 |
| GSMUA_Achr10P... | Banana | plastid | 37.3 | 55.62 |
| Solyc03g118130.2.1 | Tomato | plastid | 34.52 | 55.06 |
| VIT_17s0000g00110.t01 | Wine grape | plastid | 35.32 | 54.94 |
| AT5G51010.1 | Thale cress | plastid | 32.94 | 53.9 |
| Bra022748.1-P | Field mustard | plastid | 32.94 | 52.87 |
| KRH41049 | Soybean | nucleus, plastid | 32.94 | 52.87 |
| CDX84893 | Canola | plastid | 32.94 | 52.87 |
| KRH59722 | Soybean | nucleus | 32.14 | 52.6 |
| PGSC0003DMT400036930 | Potato | plastid | 33.33 | 52.5 |
| CDY45796 | Canola | plastid | 32.14 | 50.0 |
| KRH63883 | Soybean | plastid | 30.95 | 47.27 |
| KRH54078 | Soybean | plastid | 24.21 | 42.36 |
| GSMUA_Achr6P16380_001 | Banana | vacuole | 19.05 | 27.27 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G043650.2 | EnsemblPlantsGene:HORVU4Hr1G043650 | Gene3D:2.20.28.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005506 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR024934 | InterPro:Rubredoxin-like_dom | PANTHER:PTHR45299 |
| PFscan:PS50903 | SEG:seg | SUPFAM:SSF57802 | TMHMM:TMhelix | UniParc:UPI000B47C572 | UniProt:A0A287NW16 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:348244614..348246637
Molecular Weight (calculated)
27456.5 Da
IEP (calculated)
10.290
GRAVY (calculated)
-0.132
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: LPSPPQLHSN HRSCTPDQTA KGKVQHFLPA PTVQPSALIP SIPPLSLSLS LSLSVSTPPV ELFCHRALDQ SLAAVSCVDQ FFAFKLGRPK EESEPGRVVA
101: MALQMQAPSL MRAPAGGGPA RLRSAFYAPP LLVRLPAPGR ARSVAAARIT MRFSRVQTKQ AYICRDCGYI YKDKTPFEKL SDDYYCPVCA APKRRFRPYE
201: PPVAKNANAT DARKARKEQL KKDETVGKAL PIGIAVGIVA LAALFLYLNS VY
101: MALQMQAPSL MRAPAGGGPA RLRSAFYAPP LLVRLPAPGR ARSVAAARIT MRFSRVQTKQ AYICRDCGYI YKDKTPFEKL SDDYYCPVCA APKRRFRPYE
201: PPVAKNANAT DARKARKEQL KKDETVGKAL PIGIAVGIVA LAALFLYLNS VY
001: MAMQLPPTTL YAGRSSVVLP PTTPTLQRSS FLPYYSMRLL GNKKSLSKSS APRFSMRVSS KQAYICRDCG YIYNDRTPFD KLPDNYFCPV CAAPKRRFRA
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS
Arabidopsis Description
Rubredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FI47]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.