Factsheet for GSMUA_Achr10P12180_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
extracellular 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P12060_001
GSMUA_Achr1P24670_001
GSMUA_Achr2P22980_001
GSMUA_Achr4P10230_001
GSMUA_Achr5P21400_001
GSMUA_Achr6P08980_001
GSMUA_Achr8P10080_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51010.1	GSMUA_Achr1P12060_001	AT3G50910.1	21798944
AT5G51010.1	GSMUA_Achr2P22980_001	AT3G50910.1	21798944
AT5G51010.1	GSMUA_Achr6P08980_001	AT3G50910.1	21798944
AT5G51010.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944
AT5G51010.1	GSMUA_Achr11P...	AT5G27690.1	21798944
AT5G51010.1	GSMUA_Achr11P...	AT5G27690.1	21798944
AT5G51010.1	GSMUA_Achr1P24670_001	AT5G27690.1	21798944
AT5G51010.1	GSMUA_Achr5P21400_001	AT5G27690.1	21798944
AT5G51010.1	GSMUA_Achr8P10080_001	AT5G27690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g00110.t01	Wine grape	plastid	65.09	67.9
Zm00001d007394_P001	Maize	plastid	57.99	66.67
EES09846	Sorghum	plastid	59.17	66.23
KRH59722	Soybean	nucleus	59.76	65.58
Solyc03g118130.2.1	Tomato	plastid	59.17	63.29
KRH63883	Soybean	plastid	61.54	63.03
KRH41049	Soybean	nucleus, plastid	57.99	62.42
PGSC0003DMT400036930	Potato	plastid	57.99	61.25
Os11t0528500-01	Rice	plastid	53.85	60.26
AT5G51010.1	Thale cress	plastid	54.44	59.74
KRH54078	Soybean	plastid	50.3	59.03
TraesCS4D01G097300.1	Wheat	plastid	53.25	58.82
TraesCS4B01G100700.1	Wheat	plastid	52.66	58.17
TraesCS4A01G215500.1	Wheat	plastid	50.89	55.48
CDX84893	Canola	plastid	50.3	54.14
Bra022748.1-P	Field mustard	plastid	50.3	54.14
CDY45796	Canola	plastid	50.3	52.47
GSMUA_Achr6P16380_001	Banana	vacuole	39.05	37.5
HORVU4Hr1G043650.2	Barley	plastid	55.62	37.3

Protein Annotations

EnsemblPlants:GSMUA_Achr10P12180_001	EnsemblPlants:GSMUA_Achr10T12180_001	EnsemblPlantsGene:GSMUA_Achr10G12180_001	Gene3D:2.20.28.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR024934	InterPro:Rubredoxin-like_dom
PANTHER:PTHR45299	PFscan:PS50903	SEG:seg	SUPFAM:SSF57802	TMHMM:TMhelix	UniParc:UPI000296C278
UniProt:M0RHJ4	MapMan:35.2	:	:	:	:

Description

Putative Rubredoxin [Source:GMGC_GENE;Acc:GSMUA_Achr10G12180_001]

Coordinates

chr10:+:21290142..21291142

Molecular Weight (calculated)

18324.2 Da

IEP (calculated)

10.549

GRAVY (calculated)

-0.128

Length

169 amino acids

Sequence
(BLAST)

001: MALQAPAGLS STVAPSRTSI PPPLLSSPPS HAGLRGPSDR YALRSAFFSP SLRLLLSAPS RGSTAAPRFS MRVVSKQAYI CRDCGYIYND RTPFEKLADK
101: YFCPVCGAPK RRFRAYEPAV AKNANDIDVR KARKAQIKKD EAIGRALPVA IALGVAGLAG LYFYLNNVY

Best Arabidopsis Sequence Match ( AT5G51010.1 )
(BLAST)

001: MAMQLPPTTL YAGRSSVVLP PTTPTLQRSS FLPYYSMRLL GNKKSLSKSS APRFSMRVSS KQAYICRDCG YIYNDRTPFD KLPDNYFCPV CAAPKRRFRA
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS

Arabidopsis Description

Rubredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FI47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.