Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 5
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020667_P001 | Maize | nucleus | 20.05 | 59.4 |
| GSMUA_Achr2P22980_001 | Banana | cytosol, nucleus, peroxisome, plastid | 55.08 | 52.16 |
| GSMUA_Achr6P08980_001 | Banana | nucleus | 52.79 | 50.73 |
| OQU85551 | Sorghum | cytosol, plastid | 46.7 | 40.62 |
| HORVU6Hr1G068770.1 | Barley | nucleus | 46.7 | 40.53 |
| TraesCS6D01G252200.1 | Wheat | nucleus | 45.94 | 40.31 |
| TraesCS6A01G272000.1 | Wheat | nucleus | 46.19 | 40.27 |
| Zm00001d038964_P001 | Maize | nucleus | 43.4 | 40.24 |
| Os02t0704600-01 | Rice | nucleus | 46.45 | 40.13 |
| Zm00001d051562_P001 | Maize | plastid | 44.67 | 39.91 |
| OQU78405 | Sorghum | nucleus | 42.89 | 39.67 |
| TraesCS6B01G299600.1 | Wheat | nucleus | 45.43 | 39.08 |
| Zm00001d017768_P006 | Maize | cytosol | 46.7 | 38.74 |
| Bra036850.1-P | Field mustard | plastid | 40.36 | 38.31 |
| CDX77962 | Canola | nucleus, plastid | 40.1 | 38.07 |
| CDX90677 | Canola | nucleus | 39.34 | 37.99 |
| Bra037167.1-P | Field mustard | mitochondrion | 20.3 | 37.91 |
| CDX73773 | Canola | cytosol | 39.59 | 37.86 |
| Bra012880.1-P | Field mustard | nucleus | 39.09 | 37.75 |
| KRH08190 | Soybean | nucleus | 40.61 | 36.7 |
| CDY28989 | Canola | nucleus | 38.83 | 36.52 |
| KRH76747 | Soybean | plastid | 38.58 | 34.86 |
| Solyc02g085000.2.1 | Tomato | nucleus | 40.36 | 34.42 |
| AT3G50910.1 | Thale cress | cytosol | 38.83 | 34.23 |
| VIT_04s0023g02110.t01 | Wine grape | endoplasmic reticulum | 42.64 | 33.73 |
| PGSC0003DMT400009054 | Potato | nucleus, plastid | 40.86 | 33.47 |
| GSMUA_Achr3P24680_001 | Banana | mitochondrion | 12.69 | 32.05 |
| AT5G66480.1 | Thale cress | plastid | 35.53 | 31.53 |
| CDY18608 | Canola | nucleus | 28.93 | 31.41 |
| KRH28715 | Soybean | cytosol | 31.98 | 30.73 |
| CDY67893 | Canola | nucleus | 24.62 | 28.12 |
| KRH69884 | Soybean | nucleus | 39.59 | 21.55 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P12060_001 | EnsemblPlants:GSMUA_Achr1T12060_001 | EnsemblPlantsGene:GSMUA_Achr1G12060_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR35490 | SEG:seg | TMHMM:TMhelix | UniParc:UPI00029675A2 | UniProt:M0RZ64 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G12060_001]
Coordinates
chr1:-:9202756..9207280
Molecular Weight (calculated)
43578.8 Da
IEP (calculated)
5.136
GRAVY (calculated)
-0.703
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGRPPIPPN SSATKSNPRP NISPALYAIP ESTPLPDSPS SFPPASPYII NHKRRGPRLL NGGSRLQPPP PPQVVQKAEA VNGNGVEVGV NGSHGNEFDG
101: KGKPGASHGG QGEPDSVTVE LHEEKLKDAH VESGVVGSEE LAKPCPVDLE GDMETEDFFD PQDSLSTSSN PELDRSNGSV CWRPGTPSGE YFDAFEEISS
201: DGTSQSYRII EDELRETRLN LLMEIEKRKQ TEEAVENLQN QWKMLSHHLS LVGLKFSAPT FTIEVDKQSN VDPAELCQHI VVSRFVADAI GRACSRAEVE
301: METEPLIESK NFEIARLRDR LQYYEAANRE MSQRNQEAVE LARQHRNRRK RRQKWFWCTV GLLVTVGATA VAWSYLPVSR SSTTEGSATE SHEK
101: KGKPGASHGG QGEPDSVTVE LHEEKLKDAH VESGVVGSEE LAKPCPVDLE GDMETEDFFD PQDSLSTSSN PELDRSNGSV CWRPGTPSGE YFDAFEEISS
201: DGTSQSYRII EDELRETRLN LLMEIEKRKQ TEEAVENLQN QWKMLSHHLS LVGLKFSAPT FTIEVDKQSN VDPAELCQHI VVSRFVADAI GRACSRAEVE
301: METEPLIESK NFEIARLRDR LQYYEAANRE MSQRNQEAVE LARQHRNRRK RRQKWFWCTV GLLVTVGATA VAWSYLPVSR SSTTEGSATE SHEK
001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
Arabidopsis Description
AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.