Factsheet for PGSC0003DMT400009054

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001273
PGSC0003DMT400004234
PGSC0003DMT400005956
PGSC0003DMT400009288
PGSC0003DMT400009294
PGSC0003DMT400021078
PGSC0003DMT400032845
PGSC0003DMT400037293
PGSC0003DMT400039845
PGSC0003DMT400040097
PGSC0003DMT400047329
PGSC0003DMT400049761
PGSC0003DMT400055636
PGSC0003DMT400057207
PGSC0003DMT400064322
PGSC0003DMT400065494
PGSC0003DMT400069825
PGSC0003DMT400078676
PGSC0003DMT400094749

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50910.1	PGSC0003DMT400069825	AT1G54770.1	21798944
AT3G50910.1	PGSC0003DMT400005956	AT1G79040.1	21798944
AT3G50910.1	PGSC0003DMT400039845	AT2G20060.1	21798944
AT3G50910.1	PGSC0003DMT400055636	AT2G43370.1	21798944
AT3G50910.1	PGSC0003DMT400001273	AT3G01550.1	21798944
AT3G50910.1	PGSC0003DMT400037293	AT3G20510.1	21798944
AT3G50910.1	PGSC0003DMT400057207	AT3G20510.1	21798944
AT3G50910.1	PGSC0003DMT400004234	AT3G60200.1	21798944
AT3G50910.1	PGSC0003DMT400021078	AT3G60360.1	21798944
AT3G50910.1	PGSC0003DMT400049761	AT4G02725.1	21798944
AT3G50910.1	PGSC0003DMT400047329	AT5G05760.1	21798944
AT3G50910.1	PGSC0003DMT400094749	AT5G17630.1	21798944
AT3G50910.1	PGSC0003DMT400078676	AT5G65683.1	21798944
AT5G66480.1	PGSC0003DMT400032845	AT3G01660.1	21798944
AT5G66480.1	PGSC0003DMT400009288	AT3G50920.1	21798944
AT5G66480.1	PGSC0003DMT400009294	AT3G50920.1	21798944
AT5G66480.1	PGSC0003DMT400040097	AT3G50920.1	21798944
AT5G66480.1	PGSC0003DMT400047329	AT5G05760.1	21798944
AT5G66480.1	PGSC0003DMT400064322	AT5G67210.1	21798944
AT5G66480.1	PGSC0003DMT400065494	AT5G67210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085000.2.1	Tomato	nucleus	84.41	87.88
Zm00001d020667_P001	Maize	nucleus	14.14	51.13
Bra037167.1-P	Field mustard	mitochondrion	20.17	45.97
Bra012880.1-P	Field mustard	nucleus	38.05	44.85
CDX73773	Canola	cytosol	38.05	44.42
CDX90677	Canola	nucleus	37.63	44.36
Bra036850.1-P	Field mustard	plastid	38.05	44.1
CDX77962	Canola	nucleus, plastid	37.42	43.37
CDY28989	Canola	nucleus	37.42	42.96
KRH76747	Soybean	plastid	38.67	42.66
KRH08190	Soybean	nucleus	38.67	42.66
KRH28715	Soybean	cytosol	35.55	41.71
AT3G50910.1	Thale cress	cytosol	38.67	41.61
VIT_04s0023g02110.t01	Wine grape	endoplasmic reticulum	43.04	41.57
GSMUA_Achr1P12060_001	Banana	plastid	33.47	40.86
GSMUA_Achr6P08980_001	Banana	nucleus	34.51	40.49
GSMUA_Achr2P22980_001	Banana	cytosol, nucleus, peroxisome, plastid	34.1	39.42
AT5G66480.1	Thale cress	plastid	34.51	37.39
PGSC0003DMT400046938	Potato	mitochondrion	28.07	35.71
CDY18608	Canola	nucleus	26.82	35.54
Os02t0704600-01	Rice	nucleus	33.26	35.09
HORVU6Hr1G068770.1	Barley	nucleus	32.64	34.58
TraesCS6A01G272000.1	Wheat	nucleus	32.43	34.51
TraesCS6D01G252200.1	Wheat	nucleus	32.02	34.3
OQU85551	Sorghum	cytosol, plastid	31.81	33.77
TraesCS6B01G299600.1	Wheat	nucleus	32.02	33.62
Zm00001d038964_P001	Maize	nucleus	29.31	33.18
OQU78405	Sorghum	nucleus	29.11	32.86
Zm00001d051562_P001	Maize	plastid	29.94	32.65
CDY67893	Canola	nucleus	23.28	32.46
Zm00001d017768_P006	Maize	cytosol	31.81	32.21
KRH69884	Soybean	nucleus	37.42	24.86

Protein Annotations

EnsemblPlants:PGSC0003DMT400009054	EnsemblPlantsGene:PGSC0003DMG400003520	EntrezGene:102588412	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR35490	PGSC:PGSC0003DMG400003520	RefSeq:XP_006340649.1	RefSeq:XP_006340650.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002961442	UniProt:M0ZVJ1	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400003520]

Coordinates

chr2:-:40261378..40265879

Molecular Weight (calculated)

54171.1 Da

IEP (calculated)

4.756

GRAVY (calculated)

-0.759

Length

481 amino acids

Sequence
(BLAST)

001: MPTYTAIAMG RLIESGGSKT TTTSKSIHES KFERRINVPS SSFDRNKNGS SLNLERKIIQ TNVKMDDTNG KPSIIGDRKD HWTQISPALY TIPKPTPLPD
101: SPSFPDSPSS FPPSPYIINH KRRGPRLSQS FTEDDFGTQQ QALDGEKIDE KLRDTKKDLP STSVDDPSIS RETVNCAKED NLLFTTNNLV KDGEVTDLCD
201: GEILHQDLHN GSAGQNGTMK FVAFNLRRGG EADDFFDPQE SLSVRSFGES ESNGGFQRCL SSMTPMGEFY DAWEELSSEN GPQIPTNDFE NELREIRLSL
301: LTEIEKRKQV EEVLTNMQTQ WQRIRERLSL VGLNFPPNPV AGEELDNEQP DDQVEDLCQQ VHILRVVSES IGKGIAKAEL ETEIEAQIES KNFEIARLWD
401: RLNYYEAVNR EMSQRNQEAI ETARRLRQIR KRKQKKLIWG SIAATITIGS AVLAWSYFST GRESSSLDQS HSLEGDSASE L

Best Arabidopsis Sequence Match ( AT3G50910.1 )
(BLAST)

001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE

Arabidopsis Description

AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.