Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- cytosol 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g054140.2.1 | Tomato | cytosol, plastid | 86.87 | 91.51 |
| CDX70131 | Canola | cytosol | 12.54 | 65.62 |
| CDY14956 | Canola | cytosol | 20.9 | 63.06 |
| KRH73168 | Soybean | cytosol | 61.19 | 61.19 |
| KRH15025 | Soybean | cytosol | 59.4 | 59.76 |
| Bra005866.1-P | Field mustard | cytosol, plastid | 60.6 | 59.71 |
| CDX80972 | Canola | plastid | 60.6 | 59.53 |
| CDY11339 | Canola | cytosol, plastid | 60.3 | 59.41 |
| KRH14969 | Soybean | cytosol | 40.9 | 56.61 |
| AT5G05760.1 | Thale cress | cytosol | 56.12 | 55.95 |
| VIT_13s0067g00280.t01 | Wine grape | plastid | 63.88 | 54.18 |
| PGSC0003DMT400037606 | Potato | cytosol, plastid | 49.55 | 48.82 |
| PGSC0003DMT400011584 | Potato | cytosol, plastid | 47.76 | 45.45 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.1.3 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0009504 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0043231 | GO:GO:0061025 | InterPro:IPR000727 | UniProt:M1BKK0 | PFAM:PF05739 |
| EnsemblPlantsGene:PGSC0003DMG400018386 | PGSC:PGSC0003DMG400018386 | EnsemblPlants:PGSC0003DMT400047329 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF117 | SMART:SM00397 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI0002958B85 | SEG:seg | : | : | : |
Description
Syntaxin [Source:PGSC_GENE;Acc:PGSC0003DMG400018386]
Coordinates
chr7:-:49016191..49018126
Molecular Weight (calculated)
37174.3 Da
IEP (calculated)
8.093
GRAVY (calculated)
-0.392
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSGAWTYR DRTSEFTSLS KTLKKIAGST GSDHESQQNF ASSTTKLLPI PDRSEFNKKA SRIGLTIHQT FQKIDRLAKL AKRSSIFDDP SKEIQELTTF
101: IKNDITSLNV GVSDLQALQD MDVADGTHSK DTIVHCTAIC DDLKTRLMAA TKSFQEALTI RTKNMKAHED RKQIFSTNLS RENPLKQPPK TLAEPPPWSI
201: PTSGSGGNDV QGSNQLRRRL ASDNPPSNEM EMSMLQDQVP RQESYSQSRA TALQNVESTI SELGGIFTHL ATMVAQQGEL AIRIDDNIDE SLTNVEGAQG
301: ALLKYLNRIS SNRSLMIKIF LVVILFLCVF IFFLA
101: IKNDITSLNV GVSDLQALQD MDVADGTHSK DTIVHCTAIC DDLKTRLMAA TKSFQEALTI RTKNMKAHED RKQIFSTNLS RENPLKQPPK TLAEPPPWSI
201: PTSGSGGNDV QGSNQLRRRL ASDNPPSNEM EMSMLQDQVP RQESYSQSRA TALQNVESTI SELGGIFTHL ATMVAQQGEL AIRIDDNIDE SLTNVEGAQG
301: ALLKYLNRIS SNRSLMIKIF LVVILFLCVF IFFLA
001: MGSTFRDRTV ELHSLSQTLK KIGAIPSVHQ DEDDPASSKR SSPGSEFNKK ASRIGLGIKE TSQKITRLAK LAKQSTIFND RTVEIQELTV LIRNDITGLN
101: MALSDLQTLQ NMELADGNYS QDQVGHYTAV CDDLKTRLMG ATKQLQDVLT TRSENMKAHE NRKQLFSTKN AVDSPPQNNA KSVPEPPPWS SSSNPFGNLQ
201: QPLLPPLNTG APPGSQLRRR SAIENAPSQQ MEMSLLQQTV PKQENYSQSR AVALHSVESR ITELSGIFPQ LATMVTQQGE LAIRIDDNMD ESLVNVEGAR
301: SALLQHLTRI SSNRWLMMKI FAVIILFLIV FLFFVA
101: MALSDLQTLQ NMELADGNYS QDQVGHYTAV CDDLKTRLMG ATKQLQDVLT TRSENMKAHE NRKQLFSTKN AVDSPPQNNA KSVPEPPPWS SSSNPFGNLQ
201: QPLLPPLNTG APPGSQLRRR SAIENAPSQQ MEMSLLQQTV PKQENYSQSR AVALHSVESR ITELSGIFPQ LATMVTQQGE LAIRIDDNMD ESLVNVEGAR
301: SALLQHLTRI SSNRWLMMKI FAVIILFLIV FLFFVA
Arabidopsis Description
SYP31Syntaxin-31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFK1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.