Factsheet for PGSC0003DMT400029800

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 4
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g079000.1.1	Tomato	nucleus	100.0	100.0
KRH06758	Soybean	plasma membrane	78.35	79.58
KRG94771	Soybean	endoplasmic reticulum	77.32	79.37
VIT_08s0007g06790.t01	Wine grape	plasma membrane	78.87	79.27
Bra038695.1-P	Field mustard	plasma membrane	78.87	78.46
CDY47899	Canola	plasma membrane	78.87	78.46
AT5G06660.1	Thale cress	plasma membrane	77.84	77.04
AT3G12030.1	Thale cress	plasma membrane	76.8	76.02
Zm00001d033818_P002	Maize	extracellular	64.43	62.81
Zm00001d013397_P001	Maize	plastid	63.92	61.69
EER90966	Sorghum	endoplasmic reticulum, plastid, vacuole	64.43	61.58
TraesCS4D01G052900.1	Wheat	golgi	62.89	61.31
TraesCS4B01G052700.1	Wheat	endoplasmic reticulum, plastid, vacuole	62.37	60.8
Os03t0721400-01	Rice	plasma membrane	63.92	59.33
KRH46963	Soybean	plastid	30.41	53.15
KXG25953	Sorghum	plastid	37.11	48.0
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	29.38	47.11

Protein Annotations

EntrezGene:102597373	MapMan:35.2	ProteinID:AFW90618	ProteinID:AFW90618.1	ncoils:Coil	InterPro:EMC3/TMCO1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005262	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0030176	GO:GO:0032469	GO:GO:0070588
EMBL:JX576262	UniProt:K7W5R9	RefSeq:NP_001275630.1	PFAM:PF01956	EnsemblPlantsGene:PGSC0003DMG400011451	PGSC:PGSC0003DMG400011451
EnsemblPlants:PGSC0003DMT400029800	PIRSF:PIRSF023322	PANTHER:PTHR20917	SMART:SM01415	InterPro:TMCO1	TMHMM:TMhelix
UniParc:UPI000276A57B	:	:	:	:	:

Description

Transmembrane and coiled-coil domains protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011451]

Coordinates

chr10:+:58766327..58767240

Molecular Weight (calculated)

21460.5 Da

IEP (calculated)

10.315

GRAVY (calculated)

0.135

Length

194 amino acids

Sequence
(BLAST)

001: MAAAGFFSNT KYSDSLTLVG ISICTAIVCE AISYLLIYRT TSYKSLKSTI DKASKKLETM KTQEPVPSVL TKKSKTKKID RVETSLKEST RDLSLFKFKS
101: GFVVAVVLFM VFGFLNSLFE GKVVAKLPFI PFRLVQKMSH RGLPGDDMTD CSMAFLYFLC SISIRTNLQK FLGFSPPRGS AGAGLFPMPD PKTN

Best Arabidopsis Sequence Match ( AT5G06660.1 )
(BLAST)

001: MATAIPLFAS FKYADSLTVV GISFCTALVC EAISWILIYR TSSYKSLKSS IDKASKKLET MKTDNPSSKL TNKKSKTKKI DRVESSLKES SRDLSLFKFK
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPITIVRKMS HRGLKGDDST DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGGLFPM PDPKTN

Arabidopsis Description

Calcium load-activated calcium channel [Source:UniProtKB/TrEMBL;Acc:Q9FG04]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.