Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 5
- golgi 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47899 | Canola | plasma membrane | 100.0 | 100.0 |
| AT3G12030.1 | Thale cress | plasma membrane | 94.36 | 93.88 |
| AT5G06660.1 | Thale cress | plasma membrane | 92.31 | 91.84 |
| VIT_08s0007g06790.t01 | Wine grape | plasma membrane | 80.51 | 81.35 |
| KRH06758 | Soybean | plasma membrane | 78.46 | 80.1 |
| KRG94771 | Soybean | endoplasmic reticulum | 77.44 | 79.89 |
| Solyc10g079000.1.1 | Tomato | nucleus | 78.46 | 78.87 |
| PGSC0003DMT400029800 | Potato | plasma membrane | 78.46 | 78.87 |
| Zm00001d033818_P002 | Maize | extracellular | 65.64 | 64.32 |
| TraesCS4D01G052900.1 | Wheat | golgi | 64.1 | 62.81 |
| EER90966 | Sorghum | endoplasmic reticulum, plastid, vacuole | 65.13 | 62.56 |
| TraesCS4B01G052700.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 63.59 | 62.31 |
| Zm00001d013397_P001 | Maize | plastid | 64.1 | 62.19 |
| Os03t0721400-01 | Rice | plasma membrane | 63.08 | 58.85 |
| KRH46963 | Soybean | plastid | 32.82 | 57.66 |
| KXG25953 | Sorghum | plastid | 36.92 | 48.0 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, extracellular | 28.72 | 46.28 |
Protein Annotations
| MapMan:35.2 | EnsemblPlantsGene:Bra038695 | EnsemblPlants:Bra038695.1 | EnsemblPlants:Bra038695.1-P | InterPro:EMC3/TMCO1 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005262 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0019725 | GO:GO:0030176 | GO:GO:0032469 | GO:GO:0070588 | UniProt:M4FC79 |
| PFAM:PF01956 | PIRSF:PIRSF023322 | PANTHER:PTHR20917 | SMART:SM01415 | InterPro:TMCO1 | TMHMM:TMhelix |
| UniParc:UPI0002545418 | SEG:seg | : | : | : | : |
Description
AT3G12030 (E=6e-086) | unknown protein
Coordinates
chrA01:+:26566389..26566976
Molecular Weight (calculated)
21422.6 Da
IEP (calculated)
10.410
GRAVY (calculated)
0.162
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTIPLFAS FKYADSLTVV GISFCTALVC EAISWILIYR TTSYKSLKYS IDKAAKKLET MKTENPSSKL TVKKSKTKKM DRVETSLKES SRDLSLFKFK
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPIAIVKKMS HRGLKGDDAT DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGLFPMP DPKTN
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPIAIVKKMS HRGLKGDDAT DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGLFPMP DPKTN
001: MATTIPLFAS FKYADSLTVV GISFCTALVC EAISWILIYR TSSYKSLKYS IDKATKKLET MKTENPSSKL SIKKSKTKKI DRVETSLKES SRDLSLFKFK
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPITIVKKMS HRGLKGDDPT DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGGLFPM PDPKTN
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPITIVKKMS HRGLKGDDPT DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGGLFPM PDPKTN
Arabidopsis Description
Calcium load-activated calcium channel [Source:UniProtKB/TrEMBL;Acc:A0A178VFR5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.