Factsheet for Solyc10g079000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 4
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029800	Potato	plasma membrane	100.0	100.0
KRH06758	Soybean	plasma membrane	78.35	79.58
KRG94771	Soybean	endoplasmic reticulum	77.32	79.37
VIT_08s0007g06790.t01	Wine grape	plasma membrane	78.87	79.27
Bra038695.1-P	Field mustard	plasma membrane	78.87	78.46
CDY47899	Canola	plasma membrane	78.87	78.46
AT5G06660.1	Thale cress	plasma membrane	77.84	77.04
AT3G12030.1	Thale cress	plasma membrane	76.8	76.02
Zm00001d033818_P002	Maize	extracellular	64.43	62.81
Zm00001d013397_P001	Maize	plastid	63.92	61.69
EER90966	Sorghum	endoplasmic reticulum, plastid, vacuole	64.43	61.58
TraesCS4D01G052900.1	Wheat	golgi	62.89	61.31
TraesCS4B01G052700.1	Wheat	endoplasmic reticulum, plastid, vacuole	62.37	60.8
Os03t0721400-01	Rice	plasma membrane	63.92	59.33
KRH46963	Soybean	plastid	30.41	53.15
KXG25953	Sorghum	plastid	37.11	48.0
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	29.38	47.11

Protein Annotations

MapMan:35.2	ncoils:Coil	InterPro:EMC3/TMCO1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005262
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810
GO:GO:0006811	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725
GO:GO:0030176	GO:GO:0032469	GO:GO:0070588	UniProt:K4D2E1	PFAM:PF01956	PIRSF:PIRSF023322
PANTHER:PTHR20917	SMART:SM01415	EnsemblPlantsGene:Solyc10g079000.1	EnsemblPlants:Solyc10g079000.1.1	InterPro:TMCO1	TMHMM:TMhelix
UniParc:UPI000276A57B	:	:	:	:	:

Description

Calcium load-activated calcium channel [Source:UniProtKB/TrEMBL;Acc:K4D2E1]

Coordinates

chr10:-:60646877..60647461

Molecular Weight (calculated)

21460.5 Da

IEP (calculated)

10.315

GRAVY (calculated)

0.135

Length

194 amino acids

Sequence
(BLAST)

001: MAAAGFFSNT KYSDSLTLVG ISICTAIVCE AISYLLIYRT TSYKSLKSTI DKASKKLETM KTQEPVPSVL TKKSKTKKID RVETSLKEST RDLSLFKFKS
101: GFVVAVVLFM VFGFLNSLFE GKVVAKLPFI PFRLVQKMSH RGLPGDDMTD CSMAFLYFLC SISIRTNLQK FLGFSPPRGS AGAGLFPMPD PKTN

Best Arabidopsis Sequence Match ( AT5G06660.1 )
(BLAST)

001: MATAIPLFAS FKYADSLTVV GISFCTALVC EAISWILIYR TSSYKSLKSS IDKASKKLET MKTDNPSSKL TNKKSKTKKI DRVESSLKES SRDLSLFKFK
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPITIVRKMS HRGLKGDDST DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGGLFPM PDPKTN

Arabidopsis Description

Calcium load-activated calcium channel [Source:UniProtKB/TrEMBL;Acc:Q9FG04]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.