CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033818_P002	Maize	extracellular	63.33	47.74
EER90966	Sorghum	endoplasmic reticulum, plastid, vacuole	64.0	47.29
TraesCS4B01G052700.1	Wheat	endoplasmic reticulum, plastid, vacuole	58.67	44.22
TraesCS4D01G052900.1	Wheat	golgi	58.67	44.22
Os03t0721400-01	Rice	plasma membrane	60.67	43.54
KRH06758	Soybean	plasma membrane	49.33	38.74
KRG94771	Soybean	endoplasmic reticulum	48.67	38.62
VIT_08s0007g06790.t01	Wine grape	plasma membrane	49.33	38.34
AT3G12030.1	Thale cress	plasma membrane	48.67	37.24
AT5G06660.1	Thale cress	plasma membrane	48.67	37.24
PGSC0003DMT400029800	Potato	plasma membrane	48.0	37.11
Solyc10g079000.1.1	Tomato	nucleus	48.0	37.11
Bra038695.1-P	Field mustard	plasma membrane	48.0	36.92
CDY47899	Canola	plasma membrane	48.0	36.92
KRH46963	Soybean	plastid	21.33	28.83
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	10.0	12.4

Protein Annotations

MapMan:35.2	UniProt:A0A1B6PJW4	InterPro:EMC3/TMCO1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005262
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0019725	GO:GO:0030176	GO:GO:0032469
GO:GO:0070588	EnsemblPlants:KXG25953	ProteinID:KXG25953	ProteinID:KXG25953.1	PFAM:PF01956	PANTHER:PTHR20917
EnsemblPlantsGene:SORBI_3006G035800	InterPro:TMCO1	UniParc:UPI00081ADD05	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:11203018..11204767

Molecular Weight (calculated)

16234.8 Da

IEP (calculated)

11.099

GRAVY (calculated)

-0.139

Length

150 amino acids

Sequence
(BLAST)

001: MKSSTGSSSQ PSASSRAKKM DRVQTSLMEA AQELSFAIKS GAVVAAVLFV GRTVSKLPFA PIPLVQRMNH RSLPGNDPTN CSMVFLYFFY SMSIRTNLQK
101: LLGIAPPCTA AAANGGLFPM PNPKRRNGGR SSSIKYVYLD KERHAPLTLP

Best Arabidopsis Sequence Match ( AT5G06660.1 )
(BLAST)

001: MATAIPLFAS FKYADSLTVV GISFCTALVC EAISWILIYR TSSYKSLKSS IDKASKKLET MKTDNPSSKL TNKKSKTKKI DRVESSLKES SRDLSLFKFK
101: SGAVVALVLF VVFGLLNSLF EGKVVAKLPF HPITIVRKMS HRGLKGDDST DCSMAFLYLL CSISIRTNLQ KFLGFSPPRG AAGAGGLFPM PDPKTN

Arabidopsis Description

Calcium load-activated calcium channel [Source:UniProtKB/TrEMBL;Acc:Q9FG04]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.